MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:77.4 nTPM
HPA:77.4 nTPM
GTEx:55.6 nTPM
FANTOM5:130.6 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:25.7 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.0
2019 Male, age 18, unknown 72.4
2411 Female, age 72, unknown 69.3
1830 Male, age 51, unknown 68.6
1833 Male, age 53, unknown 65.9
1870 Female, age 42, unknown 58.0
2828 Female, age 72, unknown 54.7
2666 Male, age 74, left hemisphere 54.2
2219 Male, age 76, both hemispheres 49.4
1827 Male, age 72, unknown 49.0
2586 Male, age 75, left hemisphere 48.5
Dorsal raphe nucleus
nTPM: 50.4
2750 Male, age 76, both hemispheres 70.7
2016 Female, age 72, unknown 52.7
1828 Male, age 53, unknown 49.3
2298 Female, age 72, unknown 41.2
2047 Male, age 72, unknown 38.0
Inferior colliculus
nTPM: 47.1
1890 Male, age 53, unknown 52.6
1848 Female, age 42, unknown 46.7
2097 Female, age 72, unknown 44.8
2849 Male, age 72, unknown 44.2
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Pedunculopontine tegmental nucleus
nTPM: 55.2
2334 Male, age 80, both hemispheres 60.8
1921 Female, age 85, both hemispheres 53.7
2338 Male, age 61, both hemispheres 51.2
Periaquaductal grey, anterior
nTPM: 43.9
1947 Male, age 18, unknown 46.7
2502 Female, age 75, unknown 43.5
1795 Male, age 51, unknown 41.5
Periaquaductal grey, dorsal
nTPM: 40.4
2464 Female, age 72, unknown 53.3
1831 Male, age 72, unknown 39.8
2850 Male, age 76, both hemispheres 35.5
1840 Male, age 53, unknown 33.1
Periaquaductal grey, lateral
nTPM: 42.4
2272 Male, age 74, both hemispheres 46.4
2053 Male, age 18, unknown 44.0
2140 Male, age 76, both hemispheres 36.8
Pretectal area
nTPM: 47.2
2316 Male, age 76, right hemisphere 66.4
1815 Male, age 53, unknown 58.5
2007 Male, age 72, unknown 53.2
2407 Male, age 75, both hemispheres 50.9
1817 Female, age 42, unknown 46.7
2825 Male, age 18, unknown 46.1
2224 Female, age 72, unknown 44.6
2273 Male, age 74, both hemispheres 42.5
1816 Male, age 51, unknown 37.5
2667 Female, age 75, unknown 36.8
1944 Female, age 72, unknown 36.3
Red nucleus
nTPM: 77.4
2823 Male, age 76, right hemisphere 101.0
1904 Male, age 53, unknown 90.2
1865 Male, age 51, unknown 86.6
1821 Female, age 72, unknown 82.3
2769 Male, age 72, unknown 82.3
2227 Male, age 72, unknown 82.1
2785 Male, age 18, unknown 77.0
2503 Female, age 72, unknown 74.5
1954 Female, age 42, unknown 67.7
2588 Male, age 74, left hemisphere 67.3
2725 Female, age 75, unknown 65.6
2584 Male, age 75, left hemisphere 52.6
Substantia nigra
nTPM: 51.6
2590 Female, age 75, unknown 69.8
2583 Male, age 75, right hemisphere 60.0
2409 Female, age 72, unknown 58.6
1851 Male, age 51, unknown 55.1
1889 Female, age 72, unknown 53.7
2699 Male, age 18, unknown 47.8
2241 Male, age 72, unknown 45.3
1941 Male, age 53, unknown 43.5
1916 Female, age 42, unknown 41.4
2665 Male, age 74, both hemispheres 40.5
Superior colliculus
nTPM: 54.4
1895 Male, age 76, right hemisphere 74.3
1995 Male, age 72, unknown 74.1
1913 Female, age 42, unknown 62.6
2668 Female, age 75, unknown 57.8
1839 Male, age 51, unknown 54.6
2587 Male, age 74, left hemisphere 52.7
1796 Male, age 53, unknown 45.7
2087 Female, age 72, unknown 41.9
2261 Male, age 18, unknown 40.2
2664 Male, age 75, both hemispheres 40.0
Ventral tegmental area
nTPM: 50.6
2410 Female, age 72, unknown 61.2
2223 Female, age 72, unknown 56.0
1915 Female, age 42, unknown 48.0
1942 Male, age 51, unknown 46.5
2218 Male, age 76, both hemispheres 46.4
2021 Male, age 53, unknown 45.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.6
Samples: 139

Max nTPM: 249.1
Min nTPM: 11.1
Std nTPM: 36.0
Median nTPM: 42.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 249.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 166.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 158.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 153.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 147.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 141.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 132.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 123.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 122.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 120.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 119.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 130.6
FF:10158-103A5 76 years, female 130.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.2
Pig sample Sample description nTPM
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 26.9
Min nTPM: 13.6
Sample A Female 26.9
Sample B Female 24.4
Sample C Male 13.6
Sample D Male 17.1
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 20.9
Min nTPM: 14.6
Sample B Female 20.9
Sample C Male 14.6
Sample D Male 19.4
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 32.1
Min nTPM: 17.0
Sample A Female 21.8
Sample B Female 17.0
Sample C Male 17.7
Sample D Male 32.1
Superior colliculi
nTPM: 20.0
Samples: 4

Max nTPM: 22.0
Min nTPM: 18.1
Sample A Female 20.5
Sample B Female 18.1
Sample C Male 19.4
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.7
Samples: 4

Max nTPM: 29.6
Min nTPM: 23.2
Sample A Male 26.8
Sample B Male 23.3
Sample C Female 23.2
Sample D Female 29.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
576427 Antisense, RP_040826_01_H01, Mouse strain C57BL/6J (56 days, male) 5.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.