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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:18.3 nTPM
HPA:18.3 nTPM
GTEx:45.5 nTPM
FANTOM5:26.0 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:100.5 nTPM
Allen mouse:19.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 18.3
Sample id Sample description nTPM
Amygdala
nTPM: 9.6
1987 Female, age 91, left hemisphere 16.1
2517 Female, age 94, left hemisphere 15.3
2514 Male, age 75, right hemisphere 8.1
2814 Male, age 76, right hemisphere 4.8
2695 Female, age 67, right hemisphere 3.7
Basal amygdala
nTPM: 17.3
2243 Female, age 91, right hemisphere 32.4
2685 Female, age 94, left hemisphere 19.9
2827 Female, age 67, right hemisphere 18.0
2110 Male, age 80, left hemisphere 15.4
2609 Male, age 75, right hemisphere 10.1
1955 Male, age 76, both hemispheres 7.9
Central amygdala
nTPM: 14.5
2239 Male, age 80, left hemisphere 21.8
2826 Female, age 94, left hemisphere 21.3
2701 Female, age 91, right hemisphere 16.4
2515 Male, age 75, right hemisphere 8.7
1905 Male, age 76, both hemispheres 4.4
Corticomedial amygdala
nTPM: 17.8
2242 Female, age 91, right hemisphere 28.9
2535 Female, age 67, right hemisphere 23.0
2829 Male, age 80, left hemisphere 22.0
2429 Female, age 94, left hemisphere 16.7
2428 Male, age 75, right hemisphere 8.3
2240 Male, age 76, both hemispheres 7.7
Lateral amygdala
nTPM: 14.7
2534 Female, age 94, left hemisphere 24.3
2255 Female, age 91, right hemisphere 20.5
2256 Male, age 80, left hemisphere 17.1
2830 Female, age 67, right hemisphere 12.9
1883 Male, age 76, both hemispheres 6.6
2516 Male, age 75, right hemisphere 6.6
Stria terminalis, bed nucleus
nTPM: 18.3
2486 Female, age 94, both hemispheres 20.3
1974 Female, age 91, both hemispheres 19.2
2201 Male, age 74, unknown 15.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 45.5
Samples: 152

Max nTPM: 131.7
Min nTPM: 2.5
Std nTPM: 19.8
Median nTPM: 43.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 131.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 124.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 93.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 91.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 90.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 88.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 85.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 82.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 75.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 74.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 73.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 72.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 70.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 69.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 69.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 68.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 66.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 66.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 65.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 65.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 65.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 64.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 63.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 60.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 60.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 60.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 60.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 59.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 58.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 57.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 57.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 57.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 57.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 56.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 56.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 56.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 55.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 55.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 54.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 54.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 54.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 53.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 53.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 53.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 53.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 52.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 52.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 52.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 52.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 51.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 51.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 50.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 50.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 49.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 49.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 48.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 48.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 48.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 47.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 47.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 47.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 47.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 47.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 46.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 46.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 45.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 45.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 45.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 45.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 45.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 45.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 45.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 45.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 44.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 43.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 43.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 43.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 43.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 43.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 42.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 42.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 42.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 42.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 42.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 42.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 42.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 41.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 41.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 41.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 40.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 40.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 40.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 40.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 40.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 39.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 39.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 39.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 39.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 38.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 38.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 38.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 37.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 37.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 36.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 36.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 36.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 35.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 34.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 34.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 34.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 33.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 33.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 33.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 33.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 32.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 31.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 31.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 30.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 29.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 29.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 28.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 28.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 27.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 27.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 27.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 26.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 26.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 26.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 25.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 25.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 25.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 24.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 24.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 23.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 23.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 23.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 22.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 21.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 21.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 20.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 19.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 17.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 16.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 15.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 15.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 13.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 12.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 11.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 11.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 8.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 26.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 26.0
FF:10151-102I7 76 years, female 26.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8.5
Pig sample Sample description nTPM
Amygdala
nTPM: 8.5
Samples: 4

Max nTPM: 11.0
Min nTPM: 5.3
Sample A Female 11.0
Sample B Female 5.3
Sample C Male 8.7
Sample D Male 9.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 100.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 100.5
Samples: 4

Max nTPM: 110.4
Min nTPM: 92.4
Sample A Male 92.4
Sample B Male 104.7
Sample C Female 110.4
Sample D Female 94.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.4
76135823 Antisense, RP_060711_04_D03, Mouse strain C57BL/6J (56 days, male) 19.7
69752089 Antisense, RP_050505_01_B03, Mouse strain C57BL/6J (56 days, male) 19.1

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