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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:127.8 nTPM
HPA:127.8 nTPM
GTEx:121.1 nTPM
FANTOM5:140.4 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:137.0 nTPM
Allen mouse:7.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 127.8
Sample id Sample description nTPM
Amygdala
nTPM: 127.8
2514 Male, age 75, right hemisphere 131.6
2695 Female, age 67, right hemisphere 129.8
2814 Male, age 76, right hemisphere 128.1
1987 Female, age 91, left hemisphere 126.0
2517 Female, age 94, left hemisphere 123.7
Basal amygdala
nTPM: 119.7
2110 Male, age 80, left hemisphere 124.3
2609 Male, age 75, right hemisphere 121.5
1955 Male, age 76, both hemispheres 121.4
2685 Female, age 94, left hemisphere 119.2
2243 Female, age 91, right hemisphere 118.0
2827 Female, age 67, right hemisphere 114.1
Central amygdala
nTPM: 121.9
1905 Male, age 76, both hemispheres 125.2
2515 Male, age 75, right hemisphere 124.3
2826 Female, age 94, left hemisphere 122.3
2239 Male, age 80, left hemisphere 120.5
2701 Female, age 91, right hemisphere 117.1
Corticomedial amygdala
nTPM: 121.9
2428 Male, age 75, right hemisphere 127.3
2429 Female, age 94, left hemisphere 126.5
2829 Male, age 80, left hemisphere 124.3
2242 Female, age 91, right hemisphere 120.5
2240 Male, age 76, both hemispheres 119.6
2535 Female, age 67, right hemisphere 113.2
Lateral amygdala
nTPM: 121.6
2516 Male, age 75, right hemisphere 127.6
1883 Male, age 76, both hemispheres 125.2
2534 Female, age 94, left hemisphere 124.9
2256 Male, age 80, left hemisphere 118.8
2255 Female, age 91, right hemisphere 117.7
2830 Female, age 67, right hemisphere 115.4
Stria terminalis, bed nucleus
nTPM: 125.2
1974 Female, age 91, both hemispheres 130.5
2486 Female, age 94, both hemispheres 124.7
2201 Male, age 74, unknown 120.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 121.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 121.1
Samples: 152

Max nTPM: 245.2
Min nTPM: 83.1
Std nTPM: 26.0
Median nTPM: 117.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 245.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 225.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 217.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 189.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 181.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 174.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 167.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 162.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 162.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 161.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 161.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 160.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 159.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 159.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 158.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 151.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 148.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 148.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 148.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 146.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 145.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 144.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 143.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 143.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 142.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 141.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 140.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 140.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 139.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 139.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 139.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 138.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 137.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 135.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 135.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 133.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 133.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 131.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 130.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 130.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 129.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 129.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 128.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 127.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 126.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 125.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 125.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 125.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 125.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 124.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 124.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 124.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 124.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 123.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 122.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 122.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 122.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 122.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 121.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 121.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 121.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 120.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 120.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 120.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 120.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 120.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 120.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 119.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 119.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 119.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 118.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 118.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 118.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 118.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 117.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 117.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 116.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 116.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 115.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 115.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 115.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 114.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 114.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 114.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 113.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 113.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 112.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 112.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 111.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 111.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 111.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 110.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 110.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 110.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 109.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 109.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 109.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 108.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 108.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 107.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 106.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 106.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 106.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 105.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 105.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 105.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 105.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 104.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 104.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 103.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 103.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 103.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 103.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 103.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 103.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 103.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 103.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 103.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 103.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 101.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 100.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 100.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 99.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 99.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 98.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 98.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 97.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 97.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 96.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 96.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 96.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 96.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 95.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 95.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 95.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 95.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 95.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 95.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 92.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 92.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 92.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 91.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 91.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 90.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 90.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 87.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 85.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 84.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 83.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 140.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 140.4
FF:10151-102I7 76 years, female 140.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 59.8
Pig sample Sample description nTPM
Amygdala
nTPM: 59.8
Samples: 4

Max nTPM: 81.3
Min nTPM: 50.2
Sample A Female 81.3
Sample B Female 56.9
Sample C Male 50.2
Sample D Male 50.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 137.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 137.0
Samples: 4

Max nTPM: 142.8
Min nTPM: 128.6
Sample A Male 142.8
Sample B Male 140.9
Sample C Female 128.6
Sample D Female 135.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.6
74059243 Antisense, RP_051121_03_C07, Mouse strain C57BL/6J (56 days, male) 7.6

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