MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:127.5 nTPM
HPA:127.5 nTPM
GTEx:134.6 nTPM
FANTOM5:172.1 Scaled Tags Per Million
Pig:96.3 nTPM
Mouse:147.6 nTPM
Allen mouse:7.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 127.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.7
2411 Female, age 72, unknown 130.7
1870 Female, age 42, unknown 128.2
2019 Male, age 18, unknown 123.5
2828 Female, age 72, unknown 123.1
1827 Male, age 72, unknown 122.0
1833 Male, age 53, unknown 121.5
1830 Male, age 51, unknown 120.8
2219 Male, age 76, both hemispheres 118.6
2586 Male, age 75, left hemisphere 115.3
2666 Male, age 74, left hemisphere 113.6
Dorsal raphe nucleus
nTPM: 127.5
2298 Female, age 72, unknown 137.0
2750 Male, age 76, both hemispheres 129.2
2047 Male, age 72, unknown 124.3
1828 Male, age 53, unknown 124.1
2016 Female, age 72, unknown 122.8
Inferior colliculus
nTPM: 125.0
2097 Female, age 72, unknown 133.1
1890 Male, age 53, unknown 124.7
1848 Female, age 42, unknown 123.7
2849 Male, age 72, unknown 118.4
Median raphe nucleus
nTPM: 122.2
2220 Male, age 76, midline 122.2
Pedunculopontine tegmental nucleus
nTPM: 126.5
1921 Female, age 85, both hemispheres 129.3
2334 Male, age 80, both hemispheres 128.7
2338 Male, age 61, both hemispheres 121.4
Periaquaductal grey, anterior
nTPM: 124.9
2502 Female, age 75, unknown 126.3
1947 Male, age 18, unknown 125.8
1795 Male, age 51, unknown 122.7
Periaquaductal grey, dorsal
nTPM: 121.8
1840 Male, age 53, unknown 124.0
2464 Female, age 72, unknown 122.6
2850 Male, age 76, both hemispheres 121.1
1831 Male, age 72, unknown 119.7
Periaquaductal grey, lateral
nTPM: 123.5
2140 Male, age 76, both hemispheres 125.7
2053 Male, age 18, unknown 124.0
2272 Male, age 74, both hemispheres 120.7
Pretectal area
nTPM: 124.7
2224 Female, age 72, unknown 129.6
2316 Male, age 76, right hemisphere 126.8
2007 Male, age 72, unknown 125.6
1817 Female, age 42, unknown 125.5
1944 Female, age 72, unknown 125.3
2667 Female, age 75, unknown 125.3
1816 Male, age 51, unknown 124.7
2273 Male, age 74, both hemispheres 124.4
2825 Male, age 18, unknown 123.7
1815 Male, age 53, unknown 123.4
2407 Male, age 75, both hemispheres 117.5
Red nucleus
nTPM: 122.7
1821 Female, age 72, unknown 128.8
2503 Female, age 72, unknown 127.1
1904 Male, age 53, unknown 125.0
1954 Female, age 42, unknown 124.8
1865 Male, age 51, unknown 124.7
2785 Male, age 18, unknown 124.1
2823 Male, age 76, right hemisphere 124.0
2769 Male, age 72, unknown 122.9
2227 Male, age 72, unknown 122.7
2725 Female, age 75, unknown 120.3
2584 Male, age 75, left hemisphere 114.2
2588 Male, age 74, left hemisphere 114.2
Substantia nigra
nTPM: 126.0
2241 Male, age 72, unknown 135.6
1851 Male, age 51, unknown 130.5
2409 Female, age 72, unknown 129.1
1916 Female, age 42, unknown 128.1
1889 Female, age 72, unknown 127.1
2665 Male, age 74, both hemispheres 125.1
1941 Male, age 53, unknown 122.9
2590 Female, age 75, unknown 122.1
2699 Male, age 18, unknown 121.5
2583 Male, age 75, right hemisphere 118.3
Superior colliculus
nTPM: 122.7
2587 Male, age 74, left hemisphere 126.9
1895 Male, age 76, right hemisphere 126.6
2668 Female, age 75, unknown 126.1
2087 Female, age 72, unknown 124.6
1913 Female, age 42, unknown 124.0
1796 Male, age 53, unknown 123.7
1995 Male, age 72, unknown 123.2
2261 Male, age 18, unknown 121.9
1839 Male, age 51, unknown 119.7
2664 Male, age 75, both hemispheres 110.6
Ventral tegmental area
nTPM: 126.3
2410 Female, age 72, unknown 129.7
1915 Female, age 42, unknown 128.1
2021 Male, age 53, unknown 126.3
1942 Male, age 51, unknown 125.1
2218 Male, age 76, both hemispheres 124.6
2223 Female, age 72, unknown 123.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 134.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 134.6
Samples: 139

Max nTPM: 312.8
Min nTPM: 97.6
Std nTPM: 30.7
Median nTPM: 127.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 312.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 258.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 215.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 213.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 206.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 197.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 195.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 192.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 190.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 185.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 178.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 172.1
FF:10158-103A5 76 years, female 172.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 96.3
Pig sample Sample description nTPM
Midbrain
nTPM: 95.9
Samples: 4

Max nTPM: 124.5
Min nTPM: 83.9
Sample A Female 124.5
Sample B Female 84.9
Sample C Male 90.1
Sample D Male 83.9
Periaqueductal gray
nTPM: 79.8
Samples: 3

Max nTPM: 95.0
Min nTPM: 66.5
Sample B Female 78.0
Sample C Male 95.0
Sample D Male 66.5
Substantia nigra
nTPM: 96.3
Samples: 4

Max nTPM: 135.4
Min nTPM: 68.1
Sample A Female 135.4
Sample B Female 76.6
Sample C Male 105.2
Sample D Male 68.1
Superior colliculi
nTPM: 95.0
Samples: 4

Max nTPM: 112.9
Min nTPM: 82.2
Sample A Female 112.9
Sample B Female 82.2
Sample C Male 102.1
Sample D Male 82.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 147.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 147.6
Samples: 4

Max nTPM: 153.5
Min nTPM: 136.7
Sample A Male 153.5
Sample B Male 147.6
Sample C Female 136.7
Sample D Female 152.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.6
74059243 Antisense, RP_051121_03_C07, Mouse strain C57BL/6J (56 days, male) 7.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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