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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:81.4 nTPM
HPA:81.4 nTPM
GTEx:158.9 nTPM
FANTOM5:166.7 Scaled Tags Per Million
Pig:158.0 nTPM
Mouse:278.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 81.4
Sample id Sample description nTPM
Amygdala
nTPM: 3.9
2517 Female, age 94, left hemisphere 11.1
1987 Female, age 91, left hemisphere 8.6
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
2814 Male, age 76, right hemisphere 0.0
Basal amygdala
nTPM: 43.9
2243 Female, age 91, right hemisphere 98.3
2685 Female, age 94, left hemisphere 91.6
2110 Male, age 80, left hemisphere 36.6
1955 Male, age 76, both hemispheres 21.1
2827 Female, age 67, right hemisphere 15.7
2609 Male, age 75, right hemisphere 0.0
Central amygdala
nTPM: 31.1
2239 Male, age 80, left hemisphere 68.0
2826 Female, age 94, left hemisphere 65.9
2701 Female, age 91, right hemisphere 21.5
1905 Male, age 76, both hemispheres 0.0
2515 Male, age 75, right hemisphere 0.0
Corticomedial amygdala
nTPM: 58.6
2242 Female, age 91, right hemisphere 113.3
2535 Female, age 67, right hemisphere 77.4
2829 Male, age 80, left hemisphere 65.0
2429 Female, age 94, left hemisphere 60.7
2240 Male, age 76, both hemispheres 35.4
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 27.2
2534 Female, age 94, left hemisphere 94.0
2255 Female, age 91, right hemisphere 37.6
2256 Male, age 80, left hemisphere 24.5
1883 Male, age 76, both hemispheres 7.1
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 81.4
1974 Female, age 91, both hemispheres 132.7
2486 Female, age 94, both hemispheres 95.7
2201 Male, age 74, unknown 15.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 158.9
Samples: 152

Max nTPM: 512.8
Min nTPM: 4.9
Std nTPM: 92.6
Median nTPM: 143.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 512.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 451.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 370.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 354.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 338.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 334.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 329.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 316.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 294.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 284.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 284.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 283.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 279.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 275.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 274.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 270.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 270.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 268.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 268.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 266.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 265.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 264.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 263.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 262.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 261.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 260.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 258.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 257.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 252.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 251.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 246.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 243.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 241.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 240.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 235.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 231.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 230.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 227.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 227.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 226.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 222.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 220.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 218.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 216.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 215.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 214.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 213.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 209.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 196.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 195.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 191.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 190.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 190.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 189.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 185.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 184.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 183.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 183.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 181.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 174.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 173.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 172.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 169.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 168.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 165.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 165.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 162.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 158.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 157.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 155.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 154.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 151.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 148.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 148.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 146.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 144.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 143.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 142.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 142.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 141.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 141.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 140.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 140.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 138.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 138.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 134.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 132.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 121.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 120.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 120.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 119.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 116.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 116.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 115.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 115.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 110.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 110.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 109.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 108.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 102.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 99.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 98.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 97.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 95.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 94.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 91.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 89.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 88.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 88.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 88.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 87.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 85.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 84.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 84.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 83.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 80.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 79.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 78.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 77.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 76.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 76.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 73.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 67.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 66.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 65.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 64.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 63.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 63.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 62.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 62.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 61.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 60.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 59.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 58.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 55.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 54.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 54.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 53.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 52.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 41.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 33.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 32.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 28.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 26.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 25.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 14.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 13.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 8.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 166.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 166.7
FF:10151-102I7 76 years, female 166.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.0
Pig sample Sample description nTPM
Amygdala
nTPM: 158.0
Samples: 4

Max nTPM: 235.4
Min nTPM: 103.6
Sample A Female 235.4
Sample B Female 103.6
Sample C Male 151.9
Sample D Male 140.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 278.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 278.0
Samples: 4

Max nTPM: 310.1
Min nTPM: 259.2
Sample A Male 278.4
Sample B Male 259.2
Sample C Female 310.1
Sample D Female 264.1

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