MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:14.6 nTPM
HPA:14.6 nTPM
GTEx:9.7 nTPM
FANTOM5:64.8 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.4
2586 Male, age 75, left hemisphere 16.3
2666 Male, age 74, left hemisphere 16.3
2219 Male, age 76, both hemispheres 15.5
1833 Male, age 53, unknown 14.5
1830 Male, age 51, unknown 14.4
1870 Female, age 42, unknown 14.4
2828 Female, age 72, unknown 13.6
1827 Male, age 72, unknown 13.5
2019 Male, age 18, unknown 12.9
2411 Female, age 72, unknown 12.8
Dorsal raphe nucleus
nTPM: 12.7
2750 Male, age 76, both hemispheres 13.0
1828 Male, age 53, unknown 12.9
2016 Female, age 72, unknown 12.9
2047 Male, age 72, unknown 12.7
2298 Female, age 72, unknown 12.0
Inferior colliculus
nTPM: 13.4
2849 Male, age 72, unknown 14.9
1890 Male, age 53, unknown 13.5
1848 Female, age 42, unknown 13.3
2097 Female, age 72, unknown 12.2
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Pedunculopontine tegmental nucleus
nTPM: 14.6
2338 Male, age 61, both hemispheres 16.1
2334 Male, age 80, both hemispheres 13.9
1921 Female, age 85, both hemispheres 13.7
Periaquaductal grey, anterior
nTPM: 13.5
2502 Female, age 75, unknown 14.2
1947 Male, age 18, unknown 13.2
1795 Male, age 51, unknown 12.9
Periaquaductal grey, dorsal
nTPM: 12.9
1831 Male, age 72, unknown 13.3
2850 Male, age 76, both hemispheres 12.8
1840 Male, age 53, unknown 12.7
2464 Female, age 72, unknown 12.6
Periaquaductal grey, lateral
nTPM: 13.0
2140 Male, age 76, both hemispheres 13.8
2053 Male, age 18, unknown 12.8
2272 Male, age 74, both hemispheres 12.5
Pretectal area
nTPM: 13.0
2407 Male, age 75, both hemispheres 14.4
2825 Male, age 18, unknown 13.5
1816 Male, age 51, unknown 13.4
1815 Male, age 53, unknown 13.2
1944 Female, age 72, unknown 13.1
1817 Female, age 42, unknown 13.0
2007 Male, age 72, unknown 13.0
2316 Male, age 76, right hemisphere 12.7
2667 Female, age 75, unknown 12.7
2224 Female, age 72, unknown 12.2
2273 Male, age 74, both hemispheres 11.4
Red nucleus
nTPM: 14.6
2503 Female, age 72, unknown 15.5
2584 Male, age 75, left hemisphere 15.5
2588 Male, age 74, left hemisphere 15.5
2769 Male, age 72, unknown 15.2
1904 Male, age 53, unknown 15.0
1865 Male, age 51, unknown 14.9
2227 Male, age 72, unknown 14.4
2785 Male, age 18, unknown 14.3
2725 Female, age 75, unknown 14.1
1954 Female, age 42, unknown 13.8
1821 Female, age 72, unknown 13.3
2823 Male, age 76, right hemisphere 13.2
Substantia nigra
nTPM: 13.0
2665 Male, age 74, both hemispheres 15.4
2699 Male, age 18, unknown 14.6
2583 Male, age 75, right hemisphere 14.2
1889 Female, age 72, unknown 13.3
2590 Female, age 75, unknown 12.9
1941 Male, age 53, unknown 12.7
1851 Male, age 51, unknown 12.6
2241 Male, age 72, unknown 11.6
1916 Female, age 42, unknown 11.5
2409 Female, age 72, unknown 11.1
Superior colliculus
nTPM: 13.7
1895 Male, age 76, right hemisphere 15.2
2664 Male, age 75, both hemispheres 14.5
1913 Female, age 42, unknown 14.2
2587 Male, age 74, left hemisphere 13.7
1995 Male, age 72, unknown 13.6
2668 Female, age 75, unknown 13.6
1839 Male, age 51, unknown 13.5
2261 Male, age 18, unknown 13.5
1796 Male, age 53, unknown 13.2
2087 Female, age 72, unknown 12.6
Ventral tegmental area
nTPM: 12.3
2223 Female, age 72, unknown 12.9
1915 Female, age 42, unknown 12.8
1942 Male, age 51, unknown 12.5
2021 Male, age 53, unknown 12.0
2218 Male, age 76, both hemispheres 12.0
2410 Female, age 72, unknown 11.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 139

Max nTPM: 23.1
Min nTPM: 2.6
Std nTPM: 3.9
Median nTPM: 9.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 23.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 21.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 20.6
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 20.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 18.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 17.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 17.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 16.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 16.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 16.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 15.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.8
FF:10158-103A5 76 years, female 64.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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