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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:149.0 nTPM
HPA:149.0 nTPM
GTEx:129.9 nTPM
FANTOM5:345.9 Scaled Tags Per Million
Pig:105.6 nTPM
Mouse:89.5 nTPM
Allen mouse:15.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 149.0
Sample id Sample description nTPM
Amygdala
nTPM: 148.4
2695 Female, age 67, right hemisphere 161.4
2814 Male, age 76, right hemisphere 159.2
2514 Male, age 75, right hemisphere 153.2
1987 Female, age 91, left hemisphere 137.6
2517 Female, age 94, left hemisphere 130.6
Basal amygdala
nTPM: 131.6
2609 Male, age 75, right hemisphere 151.0
2827 Female, age 67, right hemisphere 132.8
1955 Male, age 76, both hemispheres 129.6
2110 Male, age 80, left hemisphere 129.4
2685 Female, age 94, left hemisphere 129.0
2243 Female, age 91, right hemisphere 118.0
Central amygdala
nTPM: 149.0
2826 Female, age 94, left hemisphere 191.5
2515 Male, age 75, right hemisphere 156.5
1905 Male, age 76, both hemispheres 145.5
2239 Male, age 80, left hemisphere 127.1
2701 Female, age 91, right hemisphere 124.4
Corticomedial amygdala
nTPM: 129.6
2428 Male, age 75, right hemisphere 152.3
2240 Male, age 76, both hemispheres 133.9
2829 Male, age 80, left hemisphere 133.4
2429 Female, age 94, left hemisphere 123.9
2242 Female, age 91, right hemisphere 120.3
2535 Female, age 67, right hemisphere 113.6
Lateral amygdala
nTPM: 143.7
2516 Male, age 75, right hemisphere 165.9
2534 Female, age 94, left hemisphere 153.2
2830 Female, age 67, right hemisphere 152.4
1883 Male, age 76, both hemispheres 152.2
2256 Male, age 80, left hemisphere 126.7
2255 Female, age 91, right hemisphere 112.0
Stria terminalis, bed nucleus
nTPM: 122.7
1974 Female, age 91, both hemispheres 134.4
2201 Male, age 74, unknown 124.4
2486 Female, age 94, both hemispheres 109.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 129.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 129.9
Samples: 152

Max nTPM: 233.3
Min nTPM: 83.5
Std nTPM: 28.6
Median nTPM: 122.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 233.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 232.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 221.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 207.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 202.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 191.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 184.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 182.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 181.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 180.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 174.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 174.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 173.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 170.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 169.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 168.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 167.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 167.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 167.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 165.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 163.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 162.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 159.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 159.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 158.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 157.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 157.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 155.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 153.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 151.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 148.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 148.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 148.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 148.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 148.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 146.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 146.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 145.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 144.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 143.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 142.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 141.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 141.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 140.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 139.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 138.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 138.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 135.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 135.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 133.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 132.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 131.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 131.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 131.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 131.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 130.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 130.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 130.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 130.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 130.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 128.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 128.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 127.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 127.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 127.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 126.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 126.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 126.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 125.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 125.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 124.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 122.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 122.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 122.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 122.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 122.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 122.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 121.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 121.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 121.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 120.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 120.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 120.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 120.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 119.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 119.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 119.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 118.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 117.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 116.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 116.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 115.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 115.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 114.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 114.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 114.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 113.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 113.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 113.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 112.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 112.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 112.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 112.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 112.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 111.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 111.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 111.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 110.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 110.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 110.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 110.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 110.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 109.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 109.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 108.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 108.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 107.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 107.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 107.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 107.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 107.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 107.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 106.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 105.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 105.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 104.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 104.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 104.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 104.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 103.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 102.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 102.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 101.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 100.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 100.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 100.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 99.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 98.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 98.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 97.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 97.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 97.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 97.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 97.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 95.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 93.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 90.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 89.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 87.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 83.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 345.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 345.9
FF:10151-102I7 76 years, female 345.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 105.6
Pig sample Sample description nTPM
Amygdala
nTPM: 105.6
Samples: 4

Max nTPM: 122.2
Min nTPM: 88.5
Sample A Female 122.2
Sample B Female 119.6
Sample C Male 88.5
Sample D Male 92.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 89.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 89.5
Samples: 4

Max nTPM: 92.3
Min nTPM: 86.8
Sample A Male 92.3
Sample B Male 91.9
Sample C Female 87.1
Sample D Female 86.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 15.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.6
72182999 Antisense, RP_050927_03_B03, Mouse strain C57BL/6J (56 days, male) 15.6

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