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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:172.2 nTPM
HPA:172.2 nTPM
GTEx:175.0 nTPM
FANTOM5:487.2 Scaled Tags Per Million
Pig:185.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 172.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 155.3
1981 Female, age 72, midline 169.5
2048 Male, age 55, midline 159.5
2565 Male, age 75, midline 159.4
2194 Female, age 79, both hemispheres 149.1
2816 Male, age 47, midline 139.2
Cervical spinal cord, dorsal horn
nTPM: 158.3
2173 Female, age 72, unknown 191.9
2296 Male, age 66, both hemispheres 178.0
2069 Male, age 47, both hemispheres 166.4
1877 Male, age 55, unknown 146.2
2721 Male, age 90, both hemispheres 134.3
2297 Male, age 75, both hemispheres 132.6
Cervical spinal cord, ventral horn
nTPM: 172.2
2480 Male, age 75, both hemispheres 197.7
2098 Female, age 72, unknown 183.5
2809 Male, age 90, both hemispheres 181.5
2295 Male, age 66, both hemispheres 179.3
2068 Male, age 55, unknown 151.2
2820 Female, age 79, both hemispheres 139.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 175.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 175.0
Samples: 159

Max nTPM: 319.4
Min nTPM: 107.1
Std nTPM: 31.9
Median nTPM: 170.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 319.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 253.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 252.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 248.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 243.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 239.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 238.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 232.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 230.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 229.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 228.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 227.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 227.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 225.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 225.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 221.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 221.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 219.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 218.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 216.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 214.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 214.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 212.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 208.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 207.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 205.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 204.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 204.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 203.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 202.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 202.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 202.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 201.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 200.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 199.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 196.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 195.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 195.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 195.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 193.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 192.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 191.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 190.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 188.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 186.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 185.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 184.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 183.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 183.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 182.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 182.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 180.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 180.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 180.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 179.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 178.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 178.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 177.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 177.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 176.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 176.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 176.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 176.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 176.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 176.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 174.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 174.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 174.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 174.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 174.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 174.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 173.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 173.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 173.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 172.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 171.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 171.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 170.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 170.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 170.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 169.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 168.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 168.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 167.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 166.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 166.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 166.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 166.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 166.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 165.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 165.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 164.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 163.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 162.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 162.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 162.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 162.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 162.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 161.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 160.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 160.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 160.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 159.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 159.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 159.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 159.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 158.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 158.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 158.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 157.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 157.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 157.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 157.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 156.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 156.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 155.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 155.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 155.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 154.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 154.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 153.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 153.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 151.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 150.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 149.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 149.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 148.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 147.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 147.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 146.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 145.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 145.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 144.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 144.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 144.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 144.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 144.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 143.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 143.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 143.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 141.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 140.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 140.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 140.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 140.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 140.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 139.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 136.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 136.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 135.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 135.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 132.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 132.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 131.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 128.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 126.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 125.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 110.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 107.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 487.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 487.2
FF:10159-103A6 76 years, female 505.1
FF:10181-103D1 60 years, female 469.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 185.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 178.2
Samples: 4

Max nTPM: 201.5
Min nTPM: 155.2
Sample A Female 155.2
Sample B Female 201.5
Sample C Male 200.0
Sample D Male 156.1
Ventral spinal cord
nTPM: 185.9
Samples: 4

Max nTPM: 200.5
Min nTPM: 173.8
Sample A Female 178.4
Sample B Female 191.0
Sample C Male 173.8
Sample D Male 200.5

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