BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:40.2 nTPM
HPA:40.2 nTPM
GTEx:41.0 nTPM
FANTOM5:166.4 Scaled Tags Per Million
Pig:54.7 nTPM
Mouse:77.2 nTPM
Allen mouse:5.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA017013Antibody HPA063908
Glial cells HighMedium
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.8
1781 Male, age 74, unknown 37.8
2481 Female, age 94, left hemisphere 37.7
2288 Male, age 75, left hemisphere 37.2
1857 Female, age 85, left hemisphere 35.6
1854 Male, age 80, left hemisphere 35.4
2846 Female, age 79, unknown 35.1
2289 Male, age 61, right hemisphere 34.4
2290 Female, age 72, unknown 33.1
Claustrum
nTPM: 37.0
1956 Male, age 74, unknown 40.1
2392 Female, age 94, both hemispheres 39.3
2292 Female, age 85, both hemispheres 39.0
2196 Female, age 79, unknown 37.8
2198 Male, age 80, both hemispheres 36.5
2284 Female, age 91, both hemispheres 36.1
2568 Male, age 61, both hemispheres 35.3
2491 Male, age 75, both hemispheres 35.0
2645 Female, age 72, unknown 34.2
Globus pallidus, externus
nTPM: 36.6
2395 Male, age 75, both hemispheres 37.8
2567 Female, age 72, unknown 37.2
2772 Female, age 79, unknown 37.0
1996 Male, age 80, right hemisphere 36.1
2646 Male, age 61, right hemisphere 34.8
Globus pallidus, internus
nTPM: 40.2
2778 Female, age 91, both hemispheres 42.9
2111 Female, age 85, right hemisphere 42.5
2287 Male, age 75, right hemisphere 42.2
2566 Female, age 72, unknown 40.8
2483 Female, age 94, right hemisphere 38.2
2037 Male, age 80, right hemisphere 38.1
1818 Male, age 74, unknown 36.4
Nucleus accumbens
nTPM: 37.0
2391 Female, age 94, left hemisphere 43.9
2698 Female, age 72, unknown 39.2
2824 Male, age 61, right hemisphere 36.8
2286 Male, age 75, left hemisphere 36.2
1783 Male, age 74, unknown 35.6
1806 Female, age 85, left hemisphere 34.8
2732 Male, age 80, right hemisphere 34.8
1856 Female, age 91, right hemisphere 34.4
Nucleus basalis of Meynert
nTPM: 36.2
2393 Male, age 80, right hemisphere 36.9
2821 Male, age 75, both hemispheres 36.5
2569 Male, age 61, both hemispheres 36.1
2484 Female, age 94, left hemisphere 35.4
Nucleus of the diagonal band
nTPM: 36.2
1979 Male, age 74, unknown 37.8
2195 Female, age 85, both hemispheres 37.5
2775 Male, age 80, right hemisphere 36.0
2029 Male, age 61, right hemisphere 35.8
1812 Female, age 91, both hemispheres 34.1
Olfactory tubercle
nTPM: 35.6
2856 Male, age 75, right hemisphere 37.1
1846 Male, age 80, right hemisphere 35.8
1998 Female, age 91, both hemispheres 35.0
2487 Female, age 94, left hemisphere 34.6
Putamen
nTPM: 36.0
2482 Female, age 94, left hemisphere 40.8
2466 Female, age 79, unknown 36.8
2489 Female, age 72, unknown 35.8
1937 Female, age 91, right hemisphere 35.6
1829 Male, age 74, unknown 35.3
1838 Male, age 80, right hemisphere 34.0
2647 Male, age 75, left hemisphere 33.4
Septal nuclei
nTPM: 37.6
2059 Female, age 85, both hemispheres 39.2
2629 Female, age 94, right hemisphere 38.6
1960 Male, age 74, unknown 38.2
2031 Female, age 72, unknown 37.2
2394 Male, age 61, left hemisphere 37.2
2199 Male, age 80, right hemisphere 37.0
2009 Female, age 91, both hemispheres 35.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.1
Samples: 246

Max nTPM: 57.2
Min nTPM: 27.6
Std nTPM: 4.8
Median nTPM: 39.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 57.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 56.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 56.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 54.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 52.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 51.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 51.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 51.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 50.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 49.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 48.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.0
Samples: 246

Max nTPM: 62.2
Min nTPM: 30.8
Std nTPM: 5.0
Median nTPM: 40.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 62.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 59.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 56.3
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 53.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 53.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 52.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 52.0
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 51.6
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 51.4
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 50.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 50.6
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Brain - Putamen (basal ganglia)
Average nTPM: 38.9
Samples: 205

Max nTPM: 71.6
Min nTPM: 28.7
Std nTPM: 5.6
Median nTPM: 38.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 71.6
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 57.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 56.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 55.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 55.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 52.2
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 51.6
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 50.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 49.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 48.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 48.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 166.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 144.7
FF:10164-103B2 76 years, female 144.7
Globus pallidus
Scaled Tags Per Million: 166.4
FF:10175-103C4 60 years, female 171.2
FF:10161-103A8 76 years, female 161.5
Nucleus accumbens
Scaled Tags Per Million: 151.1
FF:10037-101F1 23-56 years, mixed 151.1
Putamen
Scaled Tags Per Million: 157.3
FF:10176-103C5 60 years, female 157.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 54.7
Pig sample Sample description nTPM
Caudate
nTPM: 48.7
Samples: 4

Max nTPM: 50.1
Min nTPM: 46.4
Sample A Female 50.0
Sample B Female 46.4
Sample C Male 50.1
Sample D Male 48.3
Putamen
nTPM: 54.7
Samples: 4

Max nTPM: 59.7
Min nTPM: 46.8
Sample A Female 56.4
Sample B Female 46.8
Sample C Male 59.7
Sample D Male 55.9
Septum
nTPM: 51.7
Samples: 4

Max nTPM: 52.6
Min nTPM: 50.2
Sample A Female 52.6
Sample B Female 51.5
Sample C Male 50.2
Sample D Male 52.4
Ventral pallidum
nTPM: 51.6
Samples: 4

Max nTPM: 55.1
Min nTPM: 49.2
Sample A Female 52.0
Sample B Female 50.2
Sample C Male 49.2
Sample D Male 55.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 77.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 75.1
Samples: 4

Max nTPM: 79.9
Min nTPM: 68.7
Sample A Male 75.1
Sample B Male 68.7
Sample C Female 79.9
Sample D Female 76.8
Septum
nTPM: 77.2
Samples: 4

Max nTPM: 84.5
Min nTPM: 69.8
Sample A Male 69.8
Sample B Male 74.6
Sample C Female 80.0
Sample D Female 84.5
Ventral forebrain
nTPM: 74.9
Samples: 4

Max nTPM: 77.8
Min nTPM: 72.5
Sample A Male 72.6
Sample B Male 72.5
Sample C Female 77.8
Sample D Female 76.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.5
68203477 Antisense, RP_041208_01_B09, Mouse strain C57BL/6J (56 days, male) 4.5
Pallidum
Expression energy: 5.6
68203477 Antisense, RP_041208_01_B09, Mouse strain C57BL/6J (56 days, male) 5.6

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