MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:141.0 nTPM
HPA:141.0 nTPM
GTEx:163.1 nTPM
FANTOM5:407.6 Scaled Tags Per Million
Pig:153.3 nTPM
Mouse:143.4 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 141.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.2
2411 Female, age 72, unknown 141.6
1830 Male, age 51, unknown 140.7
1833 Male, age 53, unknown 139.6
1870 Female, age 42, unknown 136.2
2019 Male, age 18, unknown 131.0
2828 Female, age 72, unknown 129.0
1827 Male, age 72, unknown 115.4
2219 Male, age 76, both hemispheres 106.6
2666 Male, age 74, left hemisphere 105.3
2586 Male, age 75, left hemisphere 96.7
Dorsal raphe nucleus
nTPM: 121.5
2750 Male, age 76, both hemispheres 139.8
2016 Female, age 72, unknown 126.4
2298 Female, age 72, unknown 119.7
1828 Male, age 53, unknown 116.8
2047 Male, age 72, unknown 104.7
Inferior colliculus
nTPM: 108.5
2097 Female, age 72, unknown 112.2
1848 Female, age 42, unknown 109.3
1890 Male, age 53, unknown 106.6
2849 Male, age 72, unknown 106.1
Median raphe nucleus
nTPM: 112.9
2220 Male, age 76, midline 112.9
Pedunculopontine tegmental nucleus
nTPM: 126.6
2338 Male, age 61, both hemispheres 130.9
2334 Male, age 80, both hemispheres 130.6
1921 Female, age 85, both hemispheres 118.2
Periaquaductal grey, anterior
nTPM: 110.8
1947 Male, age 18, unknown 115.4
2502 Female, age 75, unknown 109.1
1795 Male, age 51, unknown 107.8
Periaquaductal grey, dorsal
nTPM: 113.6
2850 Male, age 76, both hemispheres 122.8
2464 Female, age 72, unknown 121.3
1831 Male, age 72, unknown 112.2
1840 Male, age 53, unknown 98.2
Periaquaductal grey, lateral
nTPM: 118.8
2272 Male, age 74, both hemispheres 124.5
2140 Male, age 76, both hemispheres 119.7
2053 Male, age 18, unknown 112.1
Pretectal area
nTPM: 115.4
2316 Male, age 76, right hemisphere 135.5
2273 Male, age 74, both hemispheres 134.0
1815 Male, age 53, unknown 128.3
1817 Female, age 42, unknown 121.1
2224 Female, age 72, unknown 114.9
2667 Female, age 75, unknown 113.9
2825 Male, age 18, unknown 112.7
2007 Male, age 72, unknown 108.9
2407 Male, age 75, both hemispheres 105.0
1816 Male, age 51, unknown 97.9
1944 Female, age 72, unknown 97.3
Red nucleus
nTPM: 141.0
1904 Male, age 53, unknown 168.5
1821 Female, age 72, unknown 164.7
1865 Male, age 51, unknown 153.4
2503 Female, age 72, unknown 147.7
1954 Female, age 42, unknown 147.3
2227 Male, age 72, unknown 146.3
2823 Male, age 76, right hemisphere 144.2
2769 Male, age 72, unknown 142.1
2785 Male, age 18, unknown 141.7
2725 Female, age 75, unknown 126.8
2588 Male, age 74, left hemisphere 106.9
2584 Male, age 75, left hemisphere 102.3
Substantia nigra
nTPM: 110.9
2590 Female, age 75, unknown 125.5
1889 Female, age 72, unknown 114.7
1851 Male, age 51, unknown 114.5
2409 Female, age 72, unknown 113.1
2699 Male, age 18, unknown 112.3
2583 Male, age 75, right hemisphere 109.1
1941 Male, age 53, unknown 107.6
2241 Male, age 72, unknown 107.1
1916 Female, age 42, unknown 104.1
2665 Male, age 74, both hemispheres 101.1
Superior colliculus
nTPM: 123.3
1995 Male, age 72, unknown 159.1
1913 Female, age 42, unknown 157.0
2587 Male, age 74, left hemisphere 127.6
1895 Male, age 76, right hemisphere 127.2
1839 Male, age 51, unknown 121.2
1796 Male, age 53, unknown 115.8
2668 Female, age 75, unknown 113.4
2261 Male, age 18, unknown 109.1
2087 Female, age 72, unknown 105.5
2664 Male, age 75, both hemispheres 96.7
Ventral tegmental area
nTPM: 126.6
2223 Female, age 72, unknown 161.0
2410 Female, age 72, unknown 138.0
1942 Male, age 51, unknown 118.2
1915 Female, age 42, unknown 115.7
2218 Male, age 76, both hemispheres 115.0
2021 Male, age 53, unknown 111.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 163.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 163.1
Samples: 139

Max nTPM: 488.6
Min nTPM: 55.1
Std nTPM: 63.9
Median nTPM: 145.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 488.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 361.6
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 327.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 323.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 313.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 291.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 291.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 272.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 269.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 266.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 255.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 407.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 407.6
FF:10158-103A5 76 years, female 407.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 153.3
Pig sample Sample description nTPM
Midbrain
nTPM: 148.7
Samples: 4

Max nTPM: 308.3
Min nTPM: 65.8
Sample A Female 308.3
Sample B Female 132.1
Sample C Male 88.6
Sample D Male 65.8
Periaqueductal gray
nTPM: 122.3
Samples: 3

Max nTPM: 133.5
Min nTPM: 108.1
Sample B Female 125.4
Sample C Male 108.1
Sample D Male 133.5
Substantia nigra
nTPM: 153.4
Samples: 4

Max nTPM: 209.1
Min nTPM: 116.8
Sample A Female 169.8
Sample B Female 117.7
Sample C Male 116.8
Sample D Male 209.1
Superior colliculi
nTPM: 115.3
Samples: 4

Max nTPM: 127.8
Min nTPM: 91.0
Sample A Female 127.8
Sample B Female 91.0
Sample C Male 126.4
Sample D Male 116.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 143.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 143.4
Samples: 4

Max nTPM: 147.2
Min nTPM: 138.5
Sample A Male 147.2
Sample B Male 138.5
Sample C Female 143.5
Sample D Female 144.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
69540635 Antisense, RP_050426_02_B06, Mouse strain C57BL/6J (56 days, male) 3.3
73520971 Antisense, RP_051017_04_E11, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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