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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:90.2 nTPM
GTEx:158.7 nTPM
FANTOM5:1071.9 Scaled Tags Per Million
Pig:80.5 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 90.2
Sample id Sample description nTPM
Putamen
nTPM: 90.2
2647 Male, age 75, left hemisphere 148.5
1838 Male, age 80, right hemisphere 146.4
1937 Female, age 91, right hemisphere 107.9
2466 Female, age 79, unknown 94.1
2489 Female, age 72, unknown 72.6
1829 Male, age 74, unknown 43.6
2482 Female, age 94, left hemisphere 18.3

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 158.7
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 158.7
Samples: 205

Max nTPM: 385.9
Min nTPM: 54.1
Std nTPM: 72.5
Median nTPM: 139.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 385.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 357.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 341.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 329.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 326.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 321.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 307.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 304.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 302.1
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 299.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 296.1
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 294.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 290.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 288.3
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 284.0
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 282.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 281.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 281.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 279.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 267.6
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 265.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 262.0
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 260.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 259.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 258.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 256.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 252.4
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 250.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 248.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 247.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 246.8
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 246.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 241.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 240.8
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 235.1
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 230.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 228.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 225.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 224.6
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 224.1
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 222.8
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 220.9
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 220.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 215.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 214.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 214.1
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 213.4
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 206.1
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 203.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 203.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 202.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 200.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 200.0
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 199.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 197.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 196.1
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 196.0
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 195.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 195.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 194.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 194.5
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 194.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 194.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 193.7
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 193.4
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 192.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 187.7
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 187.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 186.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 185.7
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 182.8
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 181.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 178.6
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 177.4
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 177.4
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 177.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 176.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 176.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 174.2
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 174.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 169.2
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 167.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 163.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 161.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 160.6
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 160.5
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 158.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 158.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 158.2
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 157.9
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 157.5
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 155.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 155.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 154.7
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 153.5
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 150.5
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 147.8
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 147.3
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 146.3
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 142.9
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 141.0
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 141.0
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 139.4
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 138.9
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 138.2
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 136.3
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 136.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 135.6
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 134.6
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 134.2
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 132.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 132.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 132.1
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 131.4
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 131.3
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 129.3
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 128.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 125.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 124.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 124.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 123.9
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 123.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 122.4
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 121.7
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 121.5
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 120.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 119.5
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 119.4
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 119.1
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 118.7
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 118.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 117.9
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 117.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 116.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 115.0
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 114.9
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 114.5
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 114.5
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 114.3
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 113.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 113.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 113.0
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 112.7
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 111.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 111.4
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 110.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 109.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 108.7
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 108.2
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 108.0
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 107.3
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 106.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 104.2
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 102.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 99.7
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 99.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 98.0
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 97.8
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 96.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 95.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 94.7
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 94.2
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 93.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 92.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 91.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 90.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 88.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 88.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 87.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 87.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 86.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 85.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 85.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 85.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 85.2
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 84.6
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 83.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 81.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 81.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 79.6
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 78.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 77.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 77.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 77.0
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 76.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 75.7
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 74.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 70.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 69.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 69.3
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 69.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 68.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 68.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 67.8
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 67.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 66.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 66.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 64.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 62.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 60.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 60.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 55.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 55.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 54.6
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 54.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1071.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 1071.9
FF:10176-103C5 60 years, female 1071.9

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 80.5
Pig sample Sample description nTPM
Putamen
nTPM: 80.5
Samples: 4

Max nTPM: 100.8
Min nTPM: 56.7
Sample A Female 56.7
Sample B Female 75.7
Sample C Male 88.6
Sample D Male 100.8

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