COLON - Expression summary
Protein expression
Coloni
h
m
l
n
Endothelial cells: Low
Glandular cells: High
Peripheral nerve/ganglion: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:35.7 nTPM
HPA:21.1 nTPM
GTEx:35.7 nTPM
FANTOM5:96.1 Scaled Tags Per Million

COLON - Antibody stainingi
Antibody HPA078003
Endothelial cells Low
Glandular cells High
Peripheral nerve/ganglion Low


COLON - HPA RNA-seqi
Average nTPM 21.1
overview
Male, age 54 		Colon sample 67
nTPM: 19
Cell types%
Glandular cells:
65

Smooth muscle cells:
10

Other cell types:
25
overview
Female, age 57 		Colon sample 68
nTPM: 18.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55
overview
Male, age 80 		Colon sample 69
nTPM: 16.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40
overview
Male, age 68 		Colon sample 70
nTPM: 23.6
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 68 		Colon sample 76
nTPM: 21.4
Cell types%
Glandular cells:
25

Smooth muscle cells:
5

Other cell types:
70
overview
Female, age 61 		Colon sample 299
nTPM: 22
Cell types%
Glandular cells:
5

Smooth muscle cells:
65

Other cell types:
30
overview
Male, age 80 		Colon sample 300
nTPM: 21.8
Cell types%
Glandular cells:
15

Smooth muscle cells:
20

Other cell types:
65
overview
Female, age 78 		Colon sample 368
nTPM: 19.9
Cell types%
Glandular cells:
45

Smooth muscle cells:
5

Other cell types:
50
overview
Male, age 84 		Colon sample 381
nTPM: 24.8
Cell types%
Glandular cells:
50

Smooth muscle cells:
15

Other cell types:
35
overview
Male, age 80 		Colon sample 384
nTPM: 16.5
Cell types%
Glandular cells:
20

Smooth muscle cells:
35

Other cell types:
45
overview
Female, age 78 		Colon sample 389
nTPM: 23.7
Cell types%
Glandular cells:
35

Smooth muscle cells:
10

Other cell types:
55
overview
Female, age 69 		Colon sample 391
nTPM: 24.7
Cell types%
Glandular cells:
10

Smooth muscle cells:
45

Other cell types:
45
overview
Female, age 72 		Colon sample 403
nTPM: 22
Cell types%
Glandular cells:
20

Smooth muscle cells:
15

Other cell types:
65

COLON - GTEx RNA-seqi
Average nTPM 35.7
GTEx sample id Sample description nTPM
Colon - Sigmoid
Average nTPM: 35.7
Samples: 373

Max nTPM: 62.7
Min nTPM: 14.1
Std nTPM: 6.3
Median nTPM: 36.2
GTEX-13U4I-2626-SM-5SI9C 40-49 years, female 62.7
GTEX-11ZU8-1126-SM-5EQ5K 60-69 years, male 54.1
GTEX-ZDTS-2726-SM-5L3E2 60-69 years, male 50.8
GTEX-1HBPH-2526-SM-ACKXK 40-49 years, female 50.8
GTEX-13RTJ-1926-SM-5YYA2 60-69 years, male 50.2
GTEX-1I1CD-2826-SM-A9SL4 60-69 years, female 50.0
GTEX-13O61-1526-SM-5KM3P 60-69 years, male 49.7
GTEX-1LSNM-1426-SM-E6CIH 50-59 years, male 49.2
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 47.9
GTEX-1IDJH-2826-SM-CJI49 70-79 years, male 47.5
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 47.1
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Colon - Transverse
Average nTPM: 25.4
Samples: 406

Max nTPM: 53.4
Min nTPM: 9.2
Std nTPM: 9.5
Median nTPM: 23.7
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 53.4
GTEX-1GMR2-1726-SM-9JGI2 50-59 years, male 52.0
GTEX-14DAQ-2726-SM-5S2QY 60-69 years, female 50.3
GTEX-WEY5-1426-SM-4LMJ3 40-49 years, female 47.8
GTEX-14PJ5-0926-SM-6LLIK 60-69 years, female 46.2
GTEX-1GZ4H-1226-SM-9KNUA 50-59 years, female 46.1
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 45.9
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 45.9
GTEX-U412-1726-SM-EZ6KX 60-69 years, male 45.4
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 44.9
GTEX-WVJS-2426-SM-EZ6LI 50-59 years, male 44.6
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COLON - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Colon
Scaled Tags Per Million: 96.1
FF:10014-101C5 62,83,84 years, mixed 96.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.