MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:64.0 nTPM
HPA:64.0 nTPM
GTEx:73.0 nTPM
FANTOM5:239.6 Scaled Tags Per Million
Pig:89.7 nTPM
Mouse:55.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 64.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.6
1830 Male, age 51, unknown 56.6
2828 Female, age 72, unknown 56.1
2666 Male, age 74, left hemisphere 53.3
1833 Male, age 53, unknown 52.3
2019 Male, age 18, unknown 52.0
1870 Female, age 42, unknown 50.4
2411 Female, age 72, unknown 50.4
1827 Male, age 72, unknown 50.1
2219 Male, age 76, both hemispheres 48.3
2586 Male, age 75, left hemisphere 46.6
Dorsal raphe nucleus
nTPM: 57.1
2298 Female, age 72, unknown 65.0
2016 Female, age 72, unknown 59.8
1828 Male, age 53, unknown 54.4
2750 Male, age 76, both hemispheres 54.2
2047 Male, age 72, unknown 52.1
Inferior colliculus
nTPM: 52.5
2097 Female, age 72, unknown 55.9
2849 Male, age 72, unknown 52.2
1890 Male, age 53, unknown 51.6
1848 Female, age 42, unknown 50.5
Median raphe nucleus
nTPM: 53.7
2220 Male, age 76, midline 53.7
Pedunculopontine tegmental nucleus
nTPM: 64.0
2338 Male, age 61, both hemispheres 87.2
2334 Male, age 80, both hemispheres 57.8
1921 Female, age 85, both hemispheres 47.0
Periaquaductal grey, anterior
nTPM: 51.8
1795 Male, age 51, unknown 55.9
1947 Male, age 18, unknown 50.1
2502 Female, age 75, unknown 49.4
Periaquaductal grey, dorsal
nTPM: 57.1
2850 Male, age 76, both hemispheres 62.3
1831 Male, age 72, unknown 59.8
1840 Male, age 53, unknown 53.2
2464 Female, age 72, unknown 53.0
Periaquaductal grey, lateral
nTPM: 58.4
2272 Male, age 74, both hemispheres 62.4
2140 Male, age 76, both hemispheres 57.4
2053 Male, age 18, unknown 55.4
Pretectal area
nTPM: 53.9
2224 Female, age 72, unknown 60.0
2273 Male, age 74, both hemispheres 59.3
2316 Male, age 76, right hemisphere 57.2
1817 Female, age 42, unknown 55.3
2407 Male, age 75, both hemispheres 55.1
1815 Male, age 53, unknown 53.5
2825 Male, age 18, unknown 52.9
2007 Male, age 72, unknown 52.1
1944 Female, age 72, unknown 51.5
2667 Female, age 75, unknown 49.1
1816 Male, age 51, unknown 46.8
Red nucleus
nTPM: 54.0
2725 Female, age 75, unknown 62.7
1865 Male, age 51, unknown 59.4
2503 Female, age 72, unknown 57.8
2769 Male, age 72, unknown 54.6
2227 Male, age 72, unknown 54.0
1904 Male, age 53, unknown 53.9
2823 Male, age 76, right hemisphere 53.2
2785 Male, age 18, unknown 52.8
1821 Female, age 72, unknown 51.5
1954 Female, age 42, unknown 51.1
2584 Male, age 75, left hemisphere 51.0
2588 Male, age 74, left hemisphere 46.3
Substantia nigra
nTPM: 59.8
2699 Male, age 18, unknown 74.4
2590 Female, age 75, unknown 68.2
2665 Male, age 74, both hemispheres 64.6
1851 Male, age 51, unknown 59.1
1916 Female, age 42, unknown 58.0
2409 Female, age 72, unknown 56.7
2583 Male, age 75, right hemisphere 55.6
2241 Male, age 72, unknown 55.5
1941 Male, age 53, unknown 54.3
1889 Female, age 72, unknown 51.8
Superior colliculus
nTPM: 54.2
1913 Female, age 42, unknown 66.8
1995 Male, age 72, unknown 60.0
2587 Male, age 74, left hemisphere 58.7
1796 Male, age 53, unknown 54.3
2087 Female, age 72, unknown 53.2
2664 Male, age 75, both hemispheres 51.5
1839 Male, age 51, unknown 50.6
2261 Male, age 18, unknown 49.8
2668 Female, age 75, unknown 49.2
1895 Male, age 76, right hemisphere 47.7
Ventral tegmental area
nTPM: 58.7
2021 Male, age 53, unknown 69.5
1915 Female, age 42, unknown 60.6
2410 Female, age 72, unknown 57.4
2218 Male, age 76, both hemispheres 56.9
1942 Male, age 51, unknown 54.5
2223 Female, age 72, unknown 53.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 73.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 73.0
Samples: 139

Max nTPM: 262.6
Min nTPM: 7.0
Std nTPM: 48.3
Median nTPM: 62.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 262.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 224.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 195.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 190.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 179.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 177.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 169.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 168.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 165.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 159.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 148.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 239.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 239.6
FF:10158-103A5 76 years, female 239.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.7
Pig sample Sample description nTPM
Midbrain
nTPM: 64.4
Samples: 4

Max nTPM: 116.2
Min nTPM: 22.3
Sample A Female 116.2
Sample B Female 85.7
Sample C Male 22.3
Sample D Male 33.4
Periaqueductal gray
nTPM: 89.7
Samples: 3

Max nTPM: 115.0
Min nTPM: 75.3
Sample B Female 78.7
Sample C Male 115.0
Sample D Male 75.3
Substantia nigra
nTPM: 76.9
Samples: 4

Max nTPM: 90.0
Min nTPM: 60.1
Sample A Female 90.0
Sample B Female 81.8
Sample C Male 75.6
Sample D Male 60.1
Superior colliculi
nTPM: 48.0
Samples: 4

Max nTPM: 68.8
Min nTPM: 34.4
Sample A Female 68.8
Sample B Female 34.4
Sample C Male 40.5
Sample D Male 48.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 57.8
Min nTPM: 48.4
Sample A Male 57.6
Sample B Male 57.8
Sample C Female 48.4
Sample D Female 57.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70523695 Antisense, RP_050301_01_H02, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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