BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:8.0 nTPM
HPA:8.0 nTPM
GTEx:26.7 nTPM
FANTOM5:55.5 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:12.3 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018033
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.9
1857 Female, age 85, left hemisphere 11.2
2290 Female, age 72, unknown 7.7
1854 Male, age 80, left hemisphere 7.5
1781 Male, age 74, unknown 6.7
2289 Male, age 61, right hemisphere 3.9
2846 Female, age 79, unknown 3.8
2288 Male, age 75, left hemisphere 3.4
2481 Female, age 94, left hemisphere 3.3
Claustrum
nTPM: 2.6
2196 Female, age 79, unknown 4.8
2491 Male, age 75, both hemispheres 2.7
2392 Female, age 94, both hemispheres 2.6
2645 Female, age 72, unknown 2.3
2198 Male, age 80, both hemispheres 2.2
2284 Female, age 91, both hemispheres 2.2
2292 Female, age 85, both hemispheres 2.2
2568 Male, age 61, both hemispheres 2.2
1956 Male, age 74, unknown 2.1
Globus pallidus, externus
nTPM: 2.1
2395 Male, age 75, both hemispheres 2.7
2646 Male, age 61, right hemisphere 2.1
2772 Female, age 79, unknown 2.0
1996 Male, age 80, right hemisphere 1.8
2567 Female, age 72, unknown 1.7
Globus pallidus, internus
nTPM: 2.2
2483 Female, age 94, right hemisphere 3.1
2037 Male, age 80, right hemisphere 2.5
2287 Male, age 75, right hemisphere 2.5
2111 Female, age 85, right hemisphere 2.0
2566 Female, age 72, unknown 2.0
2778 Female, age 91, both hemispheres 1.9
1818 Male, age 74, unknown 1.6
Nucleus accumbens
nTPM: 8.0
1783 Male, age 74, unknown 12.2
1806 Female, age 85, left hemisphere 11.5
1856 Female, age 91, right hemisphere 11.5
2824 Male, age 61, right hemisphere 10.1
2698 Female, age 72, unknown 7.1
2732 Male, age 80, right hemisphere 5.0
2286 Male, age 75, left hemisphere 4.3
2391 Female, age 94, left hemisphere 2.5
Nucleus basalis of Meynert
nTPM: 3.8
2393 Male, age 80, right hemisphere 5.5
2484 Female, age 94, left hemisphere 3.8
2821 Male, age 75, both hemispheres 3.5
2569 Male, age 61, both hemispheres 2.4
Nucleus of the diagonal band
nTPM: 4.3
2775 Male, age 80, right hemisphere 5.2
2029 Male, age 61, right hemisphere 4.5
1812 Female, age 91, both hemispheres 4.4
2195 Female, age 85, both hemispheres 3.9
1979 Male, age 74, unknown 3.7
Olfactory tubercle
nTPM: 3.3
2487 Female, age 94, left hemisphere 3.7
1998 Female, age 91, both hemispheres 3.6
1846 Male, age 80, right hemisphere 3.3
2856 Male, age 75, right hemisphere 2.5
Putamen
nTPM: 4.6
1838 Male, age 80, right hemisphere 9.7
1937 Female, age 91, right hemisphere 6.8
2466 Female, age 79, unknown 3.9
1829 Male, age 74, unknown 3.3
2482 Female, age 94, left hemisphere 3.0
2647 Male, age 75, left hemisphere 2.7
2489 Female, age 72, unknown 2.5
Septal nuclei
nTPM: 3.3
1960 Male, age 74, unknown 4.6
2031 Female, age 72, unknown 4.3
2059 Female, age 85, both hemispheres 4.1
2009 Female, age 91, both hemispheres 3.4
2629 Female, age 94, right hemisphere 2.6
2394 Male, age 61, left hemisphere 2.2
2199 Male, age 80, right hemisphere 1.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 26.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.9
Samples: 246

Max nTPM: 39.5
Min nTPM: 1.6
Std nTPM: 7.2
Median nTPM: 9.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 39.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 36.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 33.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 32.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 32.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 32.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 32.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 30.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 29.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 29.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 28.8
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 59.0
Min nTPM: 2.7
Std nTPM: 14.2
Median nTPM: 26.3
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 59.0
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 57.0
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 56.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 56.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 54.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 54.2
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 53.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 53.7
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 53.1
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 52.2
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 51.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 7.9
Samples: 205

Max nTPM: 38.9
Min nTPM: 0.8
Std nTPM: 6.5
Median nTPM: 5.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 38.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 28.1
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 27.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 27.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 27.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 26.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 26.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 25.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 25.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 24.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 23.1
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.5
FF:10164-103B2 76 years, female 55.5
Globus pallidus
Scaled Tags Per Million: 6.1
FF:10161-103A8 76 years, female 6.6
FF:10175-103C4 60 years, female 5.5
Nucleus accumbens
Scaled Tags Per Million: 30.7
FF:10037-101F1 23-56 years, mixed 30.7
Putamen
Scaled Tags Per Million: 50.4
FF:10176-103C5 60 years, female 50.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Caudate
nTPM: 4.4
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.0
Sample A Female 5.5
Sample B Female 4.6
Sample C Male 3.0
Sample D Male 4.3
Putamen
nTPM: 3.2
Samples: 4

Max nTPM: 4.7
Min nTPM: 2.3
Sample A Female 4.7
Sample B Female 3.4
Sample C Male 2.3
Sample D Male 2.4
Septum
nTPM: 5.0
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.3
Sample A Female 6.5
Sample B Female 4.7
Sample C Male 4.6
Sample D Male 4.3
Ventral pallidum
nTPM: 4.2
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.3
Sample A Female 5.5
Sample B Female 3.9
Sample C Male 3.3
Sample D Male 4.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.4
Samples: 4

Max nTPM: 14.4
Min nTPM: 10.2
Sample A Male 10.2
Sample B Male 10.6
Sample C Female 14.4
Sample D Female 14.2
Septum
nTPM: 12.3
Samples: 4

Max nTPM: 14.8
Min nTPM: 9.4
Sample A Male 14.8
Sample B Male 9.4
Sample C Female 14.6
Sample D Female 10.4
Ventral forebrain
nTPM: 12.1
Samples: 4

Max nTPM: 13.8
Min nTPM: 9.2
Sample A Male 11.9
Sample B Male 9.2
Sample C Female 13.8
Sample D Female 13.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
76135828 Antisense, RP_060518_01_A12, Mouse strain C57BL/6J (56 days, male) 0.1
71724558 Antisense, RP_050927_04_H07, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
76135828 Antisense, RP_060518_01_A12, Mouse strain C57BL/6J (56 days, male) 0.2
71724558 Antisense, RP_050927_04_H07, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.