BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:33.9 nTPM
HPA:33.9 nTPM
GTEx:39.8 nTPM
FANTOM5:85.2 Scaled Tags Per Million
Mouse:12.7 nTPM
Allen mouse:12.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA029773Antibody CAB004390Antibody CAB072859Antibody CAB072860
Glial cells Not detectedHighMediumMedium
Neuronal cells Not detectedHighLowMedium






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 33.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.3
2846 Female, age 79, unknown 35.9
1857 Female, age 85, left hemisphere 34.9
1781 Male, age 74, unknown 34.5
2290 Female, age 72, unknown 34.0
1854 Male, age 80, left hemisphere 33.2
2288 Male, age 75, left hemisphere 31.8
2481 Female, age 94, left hemisphere 31.8
2289 Male, age 61, right hemisphere 30.6
Claustrum
nTPM: 33.3
2645 Female, age 72, unknown 36.1
2198 Male, age 80, both hemispheres 34.8
1956 Male, age 74, unknown 33.9
2568 Male, age 61, both hemispheres 33.5
2491 Male, age 75, both hemispheres 32.8
2284 Female, age 91, both hemispheres 32.5
2196 Female, age 79, unknown 32.4
2392 Female, age 94, both hemispheres 32.1
2292 Female, age 85, both hemispheres 31.5
Globus pallidus, externus
nTPM: 33.7
2772 Female, age 79, unknown 36.3
1996 Male, age 80, right hemisphere 34.6
2395 Male, age 75, both hemispheres 34.6
2646 Male, age 61, right hemisphere 32.6
2567 Female, age 72, unknown 30.4
Globus pallidus, internus
nTPM: 33.5
1818 Male, age 74, unknown 35.5
2287 Male, age 75, right hemisphere 35.2
2778 Female, age 91, both hemispheres 34.0
2483 Female, age 94, right hemisphere 32.9
2566 Female, age 72, unknown 32.2
2037 Male, age 80, right hemisphere 32.1
2111 Female, age 85, right hemisphere 32.1
Nucleus accumbens
nTPM: 32.2
2286 Male, age 75, left hemisphere 35.2
1806 Female, age 85, left hemisphere 33.5
1783 Male, age 74, unknown 32.8
2698 Female, age 72, unknown 32.5
1856 Female, age 91, right hemisphere 31.7
2732 Male, age 80, right hemisphere 31.6
2391 Female, age 94, left hemisphere 31.0
2824 Male, age 61, right hemisphere 29.4
Nucleus basalis of Meynert
nTPM: 32.9
2484 Female, age 94, left hemisphere 33.5
2821 Male, age 75, both hemispheres 33.3
2393 Male, age 80, right hemisphere 33.1
2569 Male, age 61, both hemispheres 31.5
Nucleus of the diagonal band
nTPM: 33.2
1812 Female, age 91, both hemispheres 35.1
2775 Male, age 80, right hemisphere 34.1
2195 Female, age 85, both hemispheres 33.6
1979 Male, age 74, unknown 31.7
2029 Male, age 61, right hemisphere 31.5
Olfactory tubercle
nTPM: 33.7
1846 Male, age 80, right hemisphere 35.3
1998 Female, age 91, both hemispheres 34.0
2856 Male, age 75, right hemisphere 33.4
2487 Female, age 94, left hemisphere 32.3
Putamen
nTPM: 33.9
2466 Female, age 79, unknown 35.5
2647 Male, age 75, left hemisphere 35.4
1838 Male, age 80, right hemisphere 35.1
2482 Female, age 94, left hemisphere 34.0
1829 Male, age 74, unknown 33.9
2489 Female, age 72, unknown 33.0
1937 Female, age 91, right hemisphere 30.4
Septal nuclei
nTPM: 33.9
1960 Male, age 74, unknown 36.9
2031 Female, age 72, unknown 35.2
2059 Female, age 85, both hemispheres 34.0
2199 Male, age 80, right hemisphere 33.7
2629 Female, age 94, right hemisphere 33.5
2009 Female, age 91, both hemispheres 33.1
2394 Male, age 61, left hemisphere 30.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.1
Samples: 246

Max nTPM: 58.9
Min nTPM: 22.9
Std nTPM: 5.5
Median nTPM: 37.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 58.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 53.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 53.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 52.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 52.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 52.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 51.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 50.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 50.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 49.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 49.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.5
Samples: 246

Max nTPM: 58.1
Min nTPM: 26.1
Std nTPM: 5.2
Median nTPM: 37.4
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 58.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 56.6
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 51.3
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 51.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 49.0
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 48.2
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 47.6
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 47.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 47.3
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 47.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 47.1
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Brain - Putamen (basal ganglia)
Average nTPM: 39.8
Samples: 205

Max nTPM: 60.7
Min nTPM: 27.8
Std nTPM: 5.6
Median nTPM: 39.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 60.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 56.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 54.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 53.9
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 52.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 52.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 52.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 52.1
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 51.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 51.0
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 50.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 76.5
FF:10164-103B2 76 years, female 76.5
Globus pallidus
Scaled Tags Per Million: 85.2
FF:10161-103A8 76 years, female 96.3
FF:10175-103C4 60 years, female 74.2
Nucleus accumbens
Scaled Tags Per Million: 79.5
FF:10037-101F1 23-56 years, mixed 79.5
Putamen
Scaled Tags Per Million: 62.8
FF:10176-103C5 60 years, female 62.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 8.9
Sample A Male 13.5
Sample B Male 16.5
Sample C Female 11.8
Sample D Female 8.9
Septum
nTPM: 12.4
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.3
Sample A Male 13.3
Sample B Male 10.3
Sample C Female 14.1
Sample D Female 12.0
Ventral forebrain
nTPM: 12.2
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.8
Sample A Male 12.8
Sample B Male 10.8
Sample C Female 11.7
Sample D Female 13.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 12.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 12.0
576431 Antisense, RP_040826_01_H05, Mouse strain C57BL/6J (56 days, male) 12.0
Pallidum
Expression energy: 9.3
576431 Antisense, RP_040826_01_H05, Mouse strain C57BL/6J (56 days, male) 9.3

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The Human Protein Atlas

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