We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SEMA3B
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SEMA3B
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:76.2 nTPM
HPA:76.2 nTPM
GTEx:168.2 nTPM
FANTOM5:85.2 Scaled Tags Per Million
Pig:27.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 76.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 68.0
1981 Female, age 72, midline 78.4
2194 Female, age 79, both hemispheres 74.8
2816 Male, age 47, midline 70.6
2048 Male, age 55, midline 65.6
2565 Male, age 75, midline 50.6
Cervical spinal cord, dorsal horn
nTPM: 64.2
2296 Male, age 66, both hemispheres 103.2
2173 Female, age 72, unknown 97.1
2069 Male, age 47, both hemispheres 61.6
1877 Male, age 55, unknown 56.4
2721 Male, age 90, both hemispheres 34.0
2297 Male, age 75, both hemispheres 32.8
Cervical spinal cord, ventral horn
nTPM: 76.2
2068 Male, age 55, unknown 91.5
2098 Female, age 72, unknown 85.4
2809 Male, age 90, both hemispheres 80.3
2820 Female, age 79, both hemispheres 72.8
2480 Male, age 75, both hemispheres 65.8
2295 Male, age 66, both hemispheres 61.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 168.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 168.2
Samples: 159

Max nTPM: 350.8
Min nTPM: 43.5
Std nTPM: 53.5
Median nTPM: 166.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 350.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 318.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 304.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 296.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 275.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 274.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 273.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 272.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 255.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 253.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 249.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 244.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 244.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 239.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 238.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 236.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 235.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 234.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 231.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 225.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 225.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 222.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 222.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 216.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 215.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 215.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 214.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 213.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 212.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 211.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 211.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 210.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 210.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 208.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 207.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 207.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 206.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 204.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 202.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 200.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 199.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 199.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 199.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 192.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 192.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 191.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 191.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 189.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 188.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 188.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 188.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 187.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 187.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 186.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 185.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 185.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 184.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 183.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 182.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 182.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 181.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 181.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 180.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 180.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 180.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 180.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 180.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 179.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 178.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 175.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 175.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 175.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 175.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 173.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 170.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 169.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 169.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 168.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 167.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 166.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 166.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 165.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 165.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 164.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 163.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 163.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 159.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 159.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 155.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 154.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 154.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 153.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 153.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 153.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 151.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 151.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 150.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 149.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 149.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 148.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 147.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 146.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 146.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 146.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 144.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 144.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 141.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 141.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 141.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 140.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 140.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 140.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 140.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 139.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 137.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 135.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 134.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 133.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 132.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 129.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 127.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 127.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 126.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 126.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 126.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 125.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 124.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 124.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 122.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 120.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 117.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 116.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 116.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 115.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 114.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 112.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 111.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 111.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 109.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 107.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 103.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 102.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 102.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 101.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 101.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 99.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 99.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 98.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 96.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 95.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 95.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 88.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 86.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 73.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 68.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 63.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 58.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 49.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 43.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 85.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 85.2
FF:10181-103D1 60 years, female 97.3
FF:10159-103A6 76 years, female 73.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 27.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 28.0
Samples: 4

Max nTPM: 56.6
Min nTPM: 2.9
Sample A Female 2.9
Sample B Female 34.7
Sample C Male 56.6
Sample D Male 17.6
Ventral spinal cord
nTPM: 7.8
Samples: 4

Max nTPM: 18.1
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 4.0
Sample C Male 18.1
Sample D Male 6.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.