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NR1H4
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  • NR1H4
PROTEIN STRUCTURE
ANTIBODIES
AND
VALIDATION
Protein structures
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

NR1H4
Synonyms FXR, HRR-1, HRR1, RIP14
Gene descriptioni

Full gene name according to HGNC.

Nuclear receptor subfamily 1 group H member 4
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Disease related genes
FDA approved drug targets
Human disease related genes
Nuclear receptors
Transcription factors
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Read more
Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 12
Cytoband q23.1
Chromosome location (bp) 100473708 - 100564414
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

9
Ensembl ENSG00000012504 (version 103.38)
Entrez gene 9971
HGNC HGNC:7967
UniProt Q96RI1 (UniProt - Evidence at protein level)
neXtProt NX_Q96RI1
Antibodypedia NR1H4 antibodies


PROTEIN STRUCTUREi

The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).

In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl

Read more

Predicted


Description: Structure prediction from Alphafold project. Structure version 2

# Chains: 1      # Clinical variants: 1      # Population variants: 227

Antigens:

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On

Variants:

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Clinical
Population

Color scheme:

Confidence
Residue index
Chain name

Autorotate:

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On



PROTEIN BROWSERi

The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.

At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.

Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).

The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).

If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.

Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
NR1H4-201
NR1H4-203
NR1H4-204
NR1H4-206
NR1H4-207
NR1H4-208
NR1H4-209
NR1H4-210
NR1H4-211


PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant UniProt Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
NR1H4-201
ENSP00000188403
ENST00000188403
Q96RI1 [Direct mapping]
Bile acid receptor
Show all
Nuclear receptors
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Zinc-coordinating DNA-binding domains
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Digestive system diseases
   Liver diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0000791 [euchromatin]
GO:0000977 [RNA polymerase II transcription regulatory region sequence-specific DNA binding]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001080 [nitrogen catabolite activation of transcription from RNA polymerase II promoter]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0002376 [immune system process]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0004879 [nuclear receptor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006954 [inflammatory response]
GO:0008270 [zinc ion binding]
GO:0010903 [negative regulation of very-low-density lipoprotein particle remodeling]
GO:0010988 [regulation of low-density lipoprotein particle clearance]
GO:0015721 [bile acid and bile salt transport]
GO:0016922 [nuclear receptor binding]
GO:0030154 [cell differentiation]
GO:0030522 [intracellular receptor signaling pathway]
GO:0032052 [bile acid binding]
GO:0032620 [interleukin-17 production]
GO:0032689 [negative regulation of interferon-gamma production]
GO:0032720 [negative regulation of tumor necrosis factor production]
GO:0034142 [toll-like receptor 4 signaling pathway]
GO:0034255 [regulation of urea metabolic process]
GO:0034971 [histone H3-R17 methylation]
GO:0035356 [cellular triglyceride homeostasis]
GO:0038181 [bile acid receptor activity]
GO:0038183 [bile acid signaling pathway]
GO:0038185 [intracellular bile acid receptor signaling pathway]
GO:0042025 [host cell nucleus]
GO:0043066 [negative regulation of apoptotic process]
GO:0043124 [negative regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043235 [receptor complex]
GO:0043565 [sequence-specific DNA binding]
GO:0045087 [innate immune response]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046872 [metal ion binding]
GO:0050728 [negative regulation of inflammatory response]
GO:0061178 [regulation of insulin secretion involved in cellular response to glucose stimulus]
GO:0070857 [regulation of bile acid biosynthetic process]
GO:0071398 [cellular response to fatty acid]
GO:0071417 [cellular response to organonitrogen compound]
GO:0090181 [regulation of cholesterol metabolic process]
GO:1902122 [chenodeoxycholic acid binding]
GO:1903413 [cellular response to bile acid]
GO:1905695 [positive regulation of phosphatidic acid biosynthetic process]
GO:2000213 [positive regulation of glutamate metabolic process]
Show all
482 aa
55.5 kDa
No 0
NR1H4-203
ENSP00000376712
ENST00000392986
Q96RI1 [Direct mapping]
Bile acid receptor
F1DAL1 [Target identity:100%; Query identity:100%]
Farnesoid X nuclear receptor; Nuclear receptor subfamily 1, group H, member 4, isoform CRA_b
Show all
Nuclear receptors
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Zinc-coordinating DNA-binding domains
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Digestive system diseases
   Liver diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0000791 [euchromatin]
GO:0000977 [RNA polymerase II transcription regulatory region sequence-specific DNA binding]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001080 [nitrogen catabolite activation of transcription from RNA polymerase II promoter]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0002376 [immune system process]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0004879 [nuclear receptor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006954 [inflammatory response]
GO:0008270 [zinc ion binding]
GO:0010903 [negative regulation of very-low-density lipoprotein particle remodeling]
GO:0010988 [regulation of low-density lipoprotein particle clearance]
GO:0015721 [bile acid and bile salt transport]
GO:0016922 [nuclear receptor binding]
GO:0030154 [cell differentiation]
GO:0030522 [intracellular receptor signaling pathway]
GO:0032052 [bile acid binding]
GO:0032620 [interleukin-17 production]
GO:0032689 [negative regulation of interferon-gamma production]
GO:0032720 [negative regulation of tumor necrosis factor production]
GO:0034142 [toll-like receptor 4 signaling pathway]
GO:0034255 [regulation of urea metabolic process]
GO:0034971 [histone H3-R17 methylation]
GO:0035356 [cellular triglyceride homeostasis]
GO:0038181 [bile acid receptor activity]
GO:0038183 [bile acid signaling pathway]
GO:0038185 [intracellular bile acid receptor signaling pathway]
GO:0042025 [host cell nucleus]
GO:0043066 [negative regulation of apoptotic process]
GO:0043124 [negative regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043235 [receptor complex]
GO:0043565 [sequence-specific DNA binding]
GO:0045087 [innate immune response]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046872 [metal ion binding]
GO:0050728 [negative regulation of inflammatory response]
GO:0061178 [regulation of insulin secretion involved in cellular response to glucose stimulus]
GO:0070857 [regulation of bile acid biosynthetic process]
GO:0071398 [cellular response to fatty acid]
GO:0071417 [cellular response to organonitrogen compound]
GO:0090181 [regulation of cholesterol metabolic process]
GO:1902122 [chenodeoxycholic acid binding]
GO:1903413 [cellular response to bile acid]
GO:1905695 [positive regulation of phosphatidic acid biosynthetic process]
GO:2000213 [positive regulation of glutamate metabolic process]
Show all
476 aa
54.9 kDa
No 0
NR1H4-204
ENSP00000446760
ENST00000546380
F8W1M1 [Direct mapping]
Bile acid receptor
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Digestive system diseases
   Liver diseases
Show all
45 aa
5.2 kDa
No 0
NR1H4-206
ENSP00000448506
ENST00000548884
Q96RI1 [Direct mapping]
Bile acid receptor
B6ZGS9 [Target identity:100%; Query identity:100%]
Farnesoid X receptor; Nuclear receptor subfamily 1, group H, member 4, isoform CRA_a
Show all
Nuclear receptors
Transporters
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Zinc-coordinating DNA-binding domains
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Digestive system diseases
   Liver diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0000791 [euchromatin]
GO:0000976 [transcription regulatory region sequence-specific DNA binding]
GO:0000977 [RNA polymerase II transcription regulatory region sequence-specific DNA binding]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001080 [nitrogen catabolite activation of transcription from RNA polymerase II promoter]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0002376 [immune system process]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0004879 [nuclear receptor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006954 [inflammatory response]
GO:0008270 [zinc ion binding]
GO:0010903 [negative regulation of very-low-density lipoprotein particle remodeling]
GO:0010988 [regulation of low-density lipoprotein particle clearance]
GO:0015721 [bile acid and bile salt transport]
GO:0016922 [nuclear receptor binding]
GO:0030154 [cell differentiation]
GO:0030522 [intracellular receptor signaling pathway]
GO:0032052 [bile acid binding]
GO:0032620 [interleukin-17 production]
GO:0032689 [negative regulation of interferon-gamma production]
GO:0032720 [negative regulation of tumor necrosis factor production]
GO:0034142 [toll-like receptor 4 signaling pathway]
GO:0034255 [regulation of urea metabolic process]
GO:0034971 [histone H3-R17 methylation]
GO:0035356 [cellular triglyceride homeostasis]
GO:0038181 [bile acid receptor activity]
GO:0038183 [bile acid signaling pathway]
GO:0038185 [intracellular bile acid receptor signaling pathway]
GO:0042025 [host cell nucleus]
GO:0043066 [negative regulation of apoptotic process]
GO:0043124 [negative regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043235 [receptor complex]
GO:0043565 [sequence-specific DNA binding]
GO:0045087 [innate immune response]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046872 [metal ion binding]
GO:0050728 [negative regulation of inflammatory response]
GO:0061178 [regulation of insulin secretion involved in cellular response to glucose stimulus]
GO:0070857 [regulation of bile acid biosynthetic process]
GO:0071398 [cellular response to fatty acid]
GO:0071417 [cellular response to organonitrogen compound]
GO:0090181 [regulation of cholesterol metabolic process]
GO:1902122 [chenodeoxycholic acid binding]
GO:1903413 [cellular response to bile acid]
GO:1905695 [positive regulation of phosphatidic acid biosynthetic process]
GO:2000213 [positive regulation of glutamate metabolic process]
Show all
472 aa
54.4 kDa
No 0
NR1H4-207
ENSP00000448978
ENST00000549996
Q96RI1 [Direct mapping]
Bile acid receptor
Show all
Nuclear receptors
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Zinc-coordinating DNA-binding domains
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Digestive system diseases
   Liver diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0000791 [euchromatin]
GO:0000977 [RNA polymerase II transcription regulatory region sequence-specific DNA binding]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001080 [nitrogen catabolite activation of transcription from RNA polymerase II promoter]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0002376 [immune system process]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0004879 [nuclear receptor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006954 [inflammatory response]
GO:0008270 [zinc ion binding]
GO:0010903 [negative regulation of very-low-density lipoprotein particle remodeling]
GO:0010988 [regulation of low-density lipoprotein particle clearance]
GO:0015721 [bile acid and bile salt transport]
GO:0016922 [nuclear receptor binding]
GO:0030154 [cell differentiation]
GO:0030522 [intracellular receptor signaling pathway]
GO:0032052 [bile acid binding]
GO:0032620 [interleukin-17 production]
GO:0032689 [negative regulation of interferon-gamma production]
GO:0032720 [negative regulation of tumor necrosis factor production]
GO:0034142 [toll-like receptor 4 signaling pathway]
GO:0034255 [regulation of urea metabolic process]
GO:0034971 [histone H3-R17 methylation]
GO:0035356 [cellular triglyceride homeostasis]
GO:0038181 [bile acid receptor activity]
GO:0038183 [bile acid signaling pathway]
GO:0038185 [intracellular bile acid receptor signaling pathway]
GO:0043066 [negative regulation of apoptotic process]
GO:0043124 [negative regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043235 [receptor complex]
GO:0043565 [sequence-specific DNA binding]
GO:0045087 [innate immune response]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046872 [metal ion binding]
GO:0050728 [negative regulation of inflammatory response]
GO:0061178 [regulation of insulin secretion involved in cellular response to glucose stimulus]
GO:0070857 [regulation of bile acid biosynthetic process]
GO:0071398 [cellular response to fatty acid]
GO:0071417 [cellular response to organonitrogen compound]
GO:0090181 [regulation of cholesterol metabolic process]
GO:1902122 [chenodeoxycholic acid binding]
GO:1903413 [cellular response to bile acid]
GO:1905695 [positive regulation of phosphatidic acid biosynthetic process]
GO:2000213 [positive regulation of glutamate metabolic process]
Show all
425 aa
48.8 kDa
No 0
NR1H4-208
ENSP00000446861
ENST00000551184
H0YHD5 [Direct mapping]
Bile acid receptor
Show all
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Digestive system diseases
   Liver diseases
Show all
34 aa
3.8 kDa
No 0
NR1H4-209
ENSP00000447149
ENST00000551379
Q96RI1 [Direct mapping]
Bile acid receptor
Show all
Nuclear receptors
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Zinc-coordinating DNA-binding domains
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Digestive system diseases
   Liver diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0000791 [euchromatin]
GO:0000977 [RNA polymerase II transcription regulatory region sequence-specific DNA binding]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001080 [nitrogen catabolite activation of transcription from RNA polymerase II promoter]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0001678 [cellular glucose homeostasis]
GO:0002376 [immune system process]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0004879 [nuclear receptor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006954 [inflammatory response]
GO:0007043 [cell-cell junction assembly]
GO:0007219 [Notch signaling pathway]
GO:0008206 [bile acid metabolic process]
GO:0008270 [zinc ion binding]
GO:0010804 [negative regulation of tumor necrosis factor-mediated signaling pathway]
GO:0010903 [negative regulation of very-low-density lipoprotein particle remodeling]
GO:0010988 [regulation of low-density lipoprotein particle clearance]
GO:0015721 [bile acid and bile salt transport]
GO:0016922 [nuclear receptor binding]
GO:0030154 [cell differentiation]
GO:0030522 [intracellular receptor signaling pathway]
GO:0032052 [bile acid binding]
GO:0032088 [negative regulation of NF-kappaB transcription factor activity]
GO:0032620 [interleukin-17 production]
GO:0032689 [negative regulation of interferon-gamma production]
GO:0032692 [negative regulation of interleukin-1 production]
GO:0032703 [negative regulation of interleukin-2 production]
GO:0032715 [negative regulation of interleukin-6 production]
GO:0032720 [negative regulation of tumor necrosis factor production]
GO:0034142 [toll-like receptor 4 signaling pathway]
GO:0034162 [toll-like receptor 9 signaling pathway]
GO:0034255 [regulation of urea metabolic process]
GO:0034971 [histone H3-R17 methylation]
GO:0035356 [cellular triglyceride homeostasis]
GO:0035774 [positive regulation of insulin secretion involved in cellular response to glucose stimulus]
GO:0038181 [bile acid receptor activity]
GO:0038183 [bile acid signaling pathway]
GO:0038185 [intracellular bile acid receptor signaling pathway]
GO:0042025 [host cell nucleus]
GO:0042593 [glucose homeostasis]
GO:0042632 [cholesterol homeostasis]
GO:0042742 [defense response to bacterium]
GO:0043066 [negative regulation of apoptotic process]
GO:0043124 [negative regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043235 [receptor complex]
GO:0043565 [sequence-specific DNA binding]
GO:0045087 [innate immune response]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046628 [positive regulation of insulin receptor signaling pathway]
GO:0046872 [metal ion binding]
GO:0046965 [retinoid X receptor binding]
GO:0050728 [negative regulation of inflammatory response]
GO:0055089 [fatty acid homeostasis]
GO:0061178 [regulation of insulin secretion involved in cellular response to glucose stimulus]
GO:0070328 [triglyceride homeostasis]
GO:0070857 [regulation of bile acid biosynthetic process]
GO:0071222 [cellular response to lipopolysaccharide]
GO:0071398 [cellular response to fatty acid]
GO:0071417 [cellular response to organonitrogen compound]
GO:0071638 [negative regulation of monocyte chemotactic protein-1 production]
GO:0090181 [regulation of cholesterol metabolic process]
GO:1902122 [chenodeoxycholic acid binding]
GO:1903413 [cellular response to bile acid]
GO:1904179 [positive regulation of adipose tissue development]
GO:1905695 [positive regulation of phosphatidic acid biosynthetic process]
GO:2000213 [positive regulation of glutamate metabolic process]
GO:2001250 [positive regulation of ammonia assimilation cycle]
Show all
486 aa
55.9 kDa
No 0
NR1H4-210
ENSP00000496908
ENST00000648861
Q96RI1 [Direct mapping]
Bile acid receptor
F1DAL1 [Target identity:100%; Query identity:100%]
Farnesoid X nuclear receptor; Nuclear receptor subfamily 1, group H, member 4, isoform CRA_b
Show all
Nuclear receptors
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Zinc-coordinating DNA-binding domains
Disease related genes
FDA approved drug targets
   Small molecule drugs
Human disease related genes
   Digestive system diseases
   Liver diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
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GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0000791 [euchromatin]
GO:0000977 [RNA polymerase II transcription regulatory region sequence-specific DNA binding]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001080 [nitrogen catabolite activation of transcription from RNA polymerase II promoter]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0002376 [immune system process]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0004879 [nuclear receptor activity]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006954 [inflammatory response]
GO:0008270 [zinc ion binding]
GO:0010903 [negative regulation of very-low-density lipoprotein particle remodeling]
GO:0010988 [regulation of low-density lipoprotein particle clearance]
GO:0015721 [bile acid and bile salt transport]
GO:0016922 [nuclear receptor binding]
GO:0030154 [cell differentiation]
GO:0030522 [intracellular receptor signaling pathway]
GO:0032052 [bile acid binding]
GO:0032620 [interleukin-17 production]
GO:0032689 [negative regulation of interferon-gamma production]
GO:0032720 [negative regulation of tumor necrosis factor production]
GO:0034142 [toll-like receptor 4 signaling pathway]
GO:0034255 [regulation of urea metabolic process]
GO:0034971 [histone H3-R17 methylation]
GO:0035356 [cellular triglyceride homeostasis]
GO:0038181 [bile acid receptor activity]
GO:0038183 [bile acid signaling pathway]
GO:0038185 [intracellular bile acid receptor signaling pathway]
GO:0042025 [host cell nucleus]
GO:0043066 [negative regulation of apoptotic process]
GO:0043124 [negative regulation of I-kappaB kinase/NF-kappaB signaling]
GO:0043235 [receptor complex]
GO:0043565 [sequence-specific DNA binding]
GO:0045087 [innate immune response]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046872 [metal ion binding]
GO:0050728 [negative regulation of inflammatory response]
GO:0061178 [regulation of insulin secretion involved in cellular response to glucose stimulus]
GO:0070857 [regulation of bile acid biosynthetic process]
GO:0071398 [cellular response to fatty acid]
GO:0071417 [cellular response to organonitrogen compound]
GO:0090181 [regulation of cholesterol metabolic process]
GO:1902122 [chenodeoxycholic acid binding]
GO:1903413 [cellular response to bile acid]
GO:1905695 [positive regulation of phosphatidic acid biosynthetic process]
GO:2000213 [positive regulation of glutamate metabolic process]
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476 aa
54.9 kDa
No 0
NR1H4-211
ENSP00000496824
ENST00000649582
F8W1M1 [Direct mapping]
Bile acid receptor
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Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Human disease related genes
   Digestive system diseases
   Liver diseases
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45 aa
5.2 kDa
No 0

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