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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:63.1 nTPM
GTEx:60.1 nTPM
FANTOM5:317.5 Scaled Tags Per Million
Pig:56.4 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 63.1
Sample id Sample description nTPM
Substantia nigra
nTPM: 63.1
1916 Female, age 42, unknown 87.7
2241 Male, age 72, unknown 73.9
2699 Male, age 18, unknown 69.9
1851 Male, age 51, unknown 65.7
1889 Female, age 72, unknown 61.8
2409 Female, age 72, unknown 61.8
1941 Male, age 53, unknown 57.3
2583 Male, age 75, right hemisphere 55.5
2590 Female, age 75, unknown 48.9
2665 Male, age 74, both hemispheres 48.1

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.1
Samples: 139

Max nTPM: 134.8
Min nTPM: 25.1
Std nTPM: 20.4
Median nTPM: 55.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 134.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 124.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 117.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 112.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 110.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 107.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 102.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 101.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 97.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 96.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 95.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 95.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 95.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 95.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 86.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 84.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 82.8
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 82.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 81.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 81.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 80.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 80.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 79.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 77.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 76.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 75.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 75.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 74.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 74.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 71.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 69.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 69.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 69.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 69.3
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 67.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 66.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 66.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 66.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 66.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 65.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 65.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 65.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 64.7
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 64.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 63.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 63.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 62.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 62.7
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 62.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 62.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 61.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 61.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 61.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 61.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 61.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 60.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 60.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 59.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 59.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 59.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 59.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 59.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 58.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 57.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 57.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 56.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 55.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 55.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 54.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 54.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 54.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 54.5
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 54.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 54.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 54.0
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 52.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 52.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 52.6
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 52.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 52.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 51.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 51.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 51.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 51.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 50.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 50.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 50.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 50.4
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 49.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 49.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 49.4
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 49.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 48.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 48.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 47.8
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 47.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 47.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 46.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 46.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 46.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 45.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 45.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 45.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 44.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 44.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 44.8
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 44.7
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 44.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 44.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 44.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 44.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 43.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 43.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 43.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 42.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 41.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 41.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 41.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 40.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 40.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 40.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 39.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 39.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 38.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 37.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 36.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 36.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 36.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 36.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 36.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 34.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 32.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 32.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 30.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 29.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 28.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 25.1
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 317.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 317.5
FF:10158-103A5 76 years, female 317.5

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.4
Samples: 4

Max nTPM: 65.9
Min nTPM: 42.8
Sample A Female 57.8
Sample B Female 42.8
Sample C Male 58.9
Sample D Male 65.9

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