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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:88.3 nTPM
HPA:33.3 nTPM
GTEx:88.3 nTPM
FANTOM5:30.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA038313Antibody HPA038314
Glandular cells HighLow





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 33.3
overview
Male, age 65
Small intestine sample 232
nTPM: 35.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 31.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 30.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 35.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 88.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 88.3
Samples: 187

Max nTPM: 253.9
Min nTPM: 35.1
Std nTPM: 37.0
Median nTPM: 78.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 253.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 221.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 213.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 207.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 207.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 201.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 184.5
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 181.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 179.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 178.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 176.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 163.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 158.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 154.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 153.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 151.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 142.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 139.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 137.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 136.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 130.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 125.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 124.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 122.6
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 121.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 120.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 118.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 113.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 110.9
GTEX-1192X-2526-SM-59868 50-59 years, male 110.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 109.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 108.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 108.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 107.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 107.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 105.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 104.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 102.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 102.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 101.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 101.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 100.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 99.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 98.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 97.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 96.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 96.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 96.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 95.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 94.8
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 94.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 94.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 94.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 94.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 93.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 92.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 92.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 91.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 91.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 90.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 90.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 90.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 89.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 89.6
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 89.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 88.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 88.6
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 88.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 87.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 87.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 87.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 87.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 86.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 86.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 85.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 85.3
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 85.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 83.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 83.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 83.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 82.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 82.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 82.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 82.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 82.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 82.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 81.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 81.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 80.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 80.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 79.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 79.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 78.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 78.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 78.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 78.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 78.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 77.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 76.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 76.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 76.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 75.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 75.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 75.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 74.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 74.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 74.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 73.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 73.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 73.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 73.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 73.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 72.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 72.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 72.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 71.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 71.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 71.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 71.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 71.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 70.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 70.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 70.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 70.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 69.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 69.7
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 69.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 69.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 69.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 68.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 68.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 67.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 67.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 67.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 67.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 66.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 66.7
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 66.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 65.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 65.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 64.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 63.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 63.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 63.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 63.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 62.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 62.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 62.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 62.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 61.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 61.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 61.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 61.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 61.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 61.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 61.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 61.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 60.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 60.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 59.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 59.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 58.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 58.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 58.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 58.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 58.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 57.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 57.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 57.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 57.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 55.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 55.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 54.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 54.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 52.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 52.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 51.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 51.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 47.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 45.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 45.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 44.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 43.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 42.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 42.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 39.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 35.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 30.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 30.2
FF:10024-101D6 15,40,85 years, mixed 30.2

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