MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:133.4 nTPM
HPA:133.4 nTPM
GTEx:93.9 nTPM
FANTOM5:355.1 Scaled Tags Per Million
Pig:51.0 nTPM
Mouse:28.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 133.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 131.6
2219 Male, age 76, both hemispheres 133.9
2411 Female, age 72, unknown 133.8
1870 Female, age 42, unknown 133.6
2828 Female, age 72, unknown 133.6
1830 Male, age 51, unknown 132.1
1833 Male, age 53, unknown 131.5
2019 Male, age 18, unknown 131.0
1827 Male, age 72, unknown 130.8
2666 Male, age 74, left hemisphere 130.2
2586 Male, age 75, left hemisphere 125.0
Dorsal raphe nucleus
nTPM: 132.1
2016 Female, age 72, unknown 135.9
2298 Female, age 72, unknown 132.7
2750 Male, age 76, both hemispheres 131.0
1828 Male, age 53, unknown 130.7
2047 Male, age 72, unknown 130.1
Inferior colliculus
nTPM: 131.4
2097 Female, age 72, unknown 133.0
1890 Male, age 53, unknown 132.4
1848 Female, age 42, unknown 130.2
2849 Male, age 72, unknown 130.0
Median raphe nucleus
nTPM: 133.4
2220 Male, age 76, midline 133.4
Pedunculopontine tegmental nucleus
nTPM: 131.9
2334 Male, age 80, both hemispheres 132.5
2338 Male, age 61, both hemispheres 132.2
1921 Female, age 85, both hemispheres 131.0
Periaquaductal grey, anterior
nTPM: 130.6
1947 Male, age 18, unknown 131.6
1795 Male, age 51, unknown 131.3
2502 Female, age 75, unknown 128.8
Periaquaductal grey, dorsal
nTPM: 131.9
1831 Male, age 72, unknown 133.5
2464 Female, age 72, unknown 132.7
1840 Male, age 53, unknown 131.1
2850 Male, age 76, both hemispheres 130.5
Periaquaductal grey, lateral
nTPM: 132.2
2272 Male, age 74, both hemispheres 133.0
2053 Male, age 18, unknown 132.2
2140 Male, age 76, both hemispheres 131.4
Pretectal area
nTPM: 130.8
2273 Male, age 74, both hemispheres 137.2
2667 Female, age 75, unknown 132.0
2825 Male, age 18, unknown 131.9
2224 Female, age 72, unknown 131.6
1815 Male, age 53, unknown 130.5
1944 Female, age 72, unknown 130.2
2007 Male, age 72, unknown 130.1
2316 Male, age 76, right hemisphere 129.8
1817 Female, age 42, unknown 128.9
1816 Male, age 51, unknown 128.8
2407 Male, age 75, both hemispheres 128.3
Red nucleus
nTPM: 131.9
2503 Female, age 72, unknown 135.6
1865 Male, age 51, unknown 133.9
1904 Male, age 53, unknown 133.7
1821 Female, age 72, unknown 132.8
2227 Male, age 72, unknown 132.1
2769 Male, age 72, unknown 132.0
2823 Male, age 76, right hemisphere 131.5
2588 Male, age 74, left hemisphere 131.1
2785 Male, age 18, unknown 131.1
1954 Female, age 42, unknown 131.0
2725 Female, age 75, unknown 130.3
2584 Male, age 75, left hemisphere 128.1
Substantia nigra
nTPM: 130.7
2409 Female, age 72, unknown 135.5
2590 Female, age 75, unknown 133.2
2699 Male, age 18, unknown 132.9
2583 Male, age 75, right hemisphere 130.9
2665 Male, age 74, both hemispheres 130.1
1851 Male, age 51, unknown 129.9
2241 Male, age 72, unknown 129.6
1889 Female, age 72, unknown 129.4
1941 Male, age 53, unknown 128.3
1916 Female, age 42, unknown 127.4
Superior colliculus
nTPM: 132.0
1913 Female, age 42, unknown 141.1
1995 Male, age 72, unknown 135.4
2587 Male, age 74, left hemisphere 133.4
1796 Male, age 53, unknown 132.0
1839 Male, age 51, unknown 131.4
2668 Female, age 75, unknown 131.0
1895 Male, age 76, right hemisphere 130.9
2087 Female, age 72, unknown 130.9
2261 Male, age 18, unknown 128.1
2664 Male, age 75, both hemispheres 125.5
Ventral tegmental area
nTPM: 130.6
2410 Female, age 72, unknown 132.0
2021 Male, age 53, unknown 131.9
1915 Female, age 42, unknown 130.6
1942 Male, age 51, unknown 130.1
2223 Female, age 72, unknown 129.8
2218 Male, age 76, both hemispheres 129.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.9
Samples: 139

Max nTPM: 338.1
Min nTPM: 9.8
Std nTPM: 59.6
Median nTPM: 78.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 338.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 320.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 297.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 295.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 285.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 261.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 260.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 234.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 227.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 190.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 163.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 355.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 355.1
FF:10158-103A5 76 years, female 355.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.0
Pig sample Sample description nTPM
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 53.0
Min nTPM: 45.8
Sample A Female 47.3
Sample B Female 52.3
Sample C Male 45.8
Sample D Male 53.0
Periaqueductal gray
nTPM: 51.0
Samples: 3

Max nTPM: 59.9
Min nTPM: 44.6
Sample B Female 48.5
Sample C Male 44.6
Sample D Male 59.9
Substantia nigra
nTPM: 50.0
Samples: 4

Max nTPM: 61.5
Min nTPM: 41.5
Sample A Female 41.5
Sample B Female 51.5
Sample C Male 45.3
Sample D Male 61.5
Superior colliculi
nTPM: 44.6
Samples: 4

Max nTPM: 50.7
Min nTPM: 33.5
Sample A Female 33.5
Sample B Female 50.7
Sample C Male 44.6
Sample D Male 49.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 35.9
Min nTPM: 20.5
Sample A Male 33.1
Sample B Male 35.9
Sample C Female 20.5
Sample D Female 22.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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