MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.5 nTPM
HPA:46.5 nTPM
GTEx:45.7 nTPM
FANTOM5:37.3 Scaled Tags Per Million
Pig:18.0 nTPM
Mouse:30.1 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.9
1870 Female, age 42, unknown 48.3
2411 Female, age 72, unknown 47.7
2019 Male, age 18, unknown 44.8
1833 Male, age 53, unknown 44.6
2828 Female, age 72, unknown 44.1
1830 Male, age 51, unknown 44.0
1827 Male, age 72, unknown 42.8
2219 Male, age 76, both hemispheres 41.9
2666 Male, age 74, left hemisphere 40.4
2586 Male, age 75, left hemisphere 39.9
Dorsal raphe nucleus
nTPM: 45.5
2298 Female, age 72, unknown 46.6
2750 Male, age 76, both hemispheres 46.4
1828 Male, age 53, unknown 45.1
2047 Male, age 72, unknown 44.9
2016 Female, age 72, unknown 44.4
Inferior colliculus
nTPM: 43.1
2097 Female, age 72, unknown 44.3
1890 Male, age 53, unknown 43.4
1848 Female, age 42, unknown 42.5
2849 Male, age 72, unknown 42.2
Median raphe nucleus
nTPM: 44.5
2220 Male, age 76, midline 44.5
Pedunculopontine tegmental nucleus
nTPM: 43.8
2334 Male, age 80, both hemispheres 44.9
1921 Female, age 85, both hemispheres 44.0
2338 Male, age 61, both hemispheres 42.6
Periaquaductal grey, anterior
nTPM: 43.7
1947 Male, age 18, unknown 44.5
2502 Female, age 75, unknown 43.9
1795 Male, age 51, unknown 42.6
Periaquaductal grey, dorsal
nTPM: 42.9
2464 Female, age 72, unknown 44.0
1840 Male, age 53, unknown 43.1
2850 Male, age 76, both hemispheres 43.0
1831 Male, age 72, unknown 41.3
Periaquaductal grey, lateral
nTPM: 42.1
2272 Male, age 74, both hemispheres 43.0
2140 Male, age 76, both hemispheres 41.9
2053 Male, age 18, unknown 41.5
Pretectal area
nTPM: 43.6
1817 Female, age 42, unknown 45.5
2007 Male, age 72, unknown 44.8
2667 Female, age 75, unknown 44.7
1815 Male, age 53, unknown 44.6
2224 Female, age 72, unknown 44.4
2316 Male, age 76, right hemisphere 44.2
2273 Male, age 74, both hemispheres 43.6
1944 Female, age 72, unknown 43.5
2825 Male, age 18, unknown 42.3
1816 Male, age 51, unknown 41.4
2407 Male, age 75, both hemispheres 40.4
Red nucleus
nTPM: 46.5
1904 Male, age 53, unknown 50.3
1954 Female, age 42, unknown 50.1
1865 Male, age 51, unknown 48.4
2503 Female, age 72, unknown 47.8
1821 Female, age 72, unknown 47.7
2823 Male, age 76, right hemisphere 46.6
2227 Male, age 72, unknown 46.2
2785 Male, age 18, unknown 46.1
2725 Female, age 75, unknown 45.1
2769 Male, age 72, unknown 44.6
2588 Male, age 74, left hemisphere 43.5
2584 Male, age 75, left hemisphere 42.0
Substantia nigra
nTPM: 44.7
2409 Female, age 72, unknown 47.3
2241 Male, age 72, unknown 47.2
1851 Male, age 51, unknown 46.3
1889 Female, age 72, unknown 46.3
2590 Female, age 75, unknown 44.9
2699 Male, age 18, unknown 43.9
1916 Female, age 42, unknown 43.7
1941 Male, age 53, unknown 43.1
2583 Male, age 75, right hemisphere 42.1
2665 Male, age 74, both hemispheres 42.0
Superior colliculus
nTPM: 43.8
1913 Female, age 42, unknown 47.8
1995 Male, age 72, unknown 46.1
2587 Male, age 74, left hemisphere 45.5
2261 Male, age 18, unknown 44.7
1895 Male, age 76, right hemisphere 43.3
1796 Male, age 53, unknown 43.1
2668 Female, age 75, unknown 43.0
1839 Male, age 51, unknown 42.9
2087 Female, age 72, unknown 42.8
2664 Male, age 75, both hemispheres 38.9
Ventral tegmental area
nTPM: 45.5
2410 Female, age 72, unknown 49.8
1942 Male, age 51, unknown 46.0
2218 Male, age 76, both hemispheres 45.5
1915 Female, age 42, unknown 45.2
2223 Female, age 72, unknown 44.4
2021 Male, age 53, unknown 42.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.7
Samples: 139

Max nTPM: 73.1
Min nTPM: 26.0
Std nTPM: 10.0
Median nTPM: 43.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 73.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 73.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 69.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 66.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 65.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 65.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 64.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 64.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 64.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 63.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.3
FF:10158-103A5 76 years, female 37.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.0
Pig sample Sample description nTPM
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 27.9
Min nTPM: 9.6
Sample A Female 27.9
Sample B Female 12.0
Sample C Male 13.4
Sample D Male 9.6
Periaqueductal gray
nTPM: 10.0
Samples: 3

Max nTPM: 10.7
Min nTPM: 9.5
Sample B Female 9.5
Sample C Male 10.7
Sample D Male 9.9
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 17.8
Min nTPM: 10.0
Sample A Female 17.8
Sample B Female 12.4
Sample C Male 11.0
Sample D Male 10.0
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 26.6
Min nTPM: 11.9
Sample A Female 19.0
Sample B Female 26.6
Sample C Male 14.5
Sample D Male 11.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.1
Samples: 4

Max nTPM: 34.8
Min nTPM: 26.2
Sample A Male 34.8
Sample B Male 32.2
Sample C Female 26.2
Sample D Female 27.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
74988456 Antisense, RP_060315_05_D11, Mouse strain C57BL/6J (56 days, male) 2.7
70431349 Antisense, RP_050614_02_F07, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.