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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:235.9 nTPM
HPA:235.9 nTPM
GTEx:178.3 nTPM
FANTOM5:193.2 Scaled Tags Per Million
Pig:176.7 nTPM
Mouse:940.1 nTPM
Allen mouse:26.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 235.9
Sample id Sample description nTPM
Amygdala
nTPM: 203.0
2814 Male, age 76, right hemisphere 258.0
1987 Female, age 91, left hemisphere 203.9
2514 Male, age 75, right hemisphere 197.6
2517 Female, age 94, left hemisphere 189.2
2695 Female, age 67, right hemisphere 166.4
Basal amygdala
nTPM: 186.3
1955 Male, age 76, both hemispheres 205.2
2243 Female, age 91, right hemisphere 203.5
2110 Male, age 80, left hemisphere 196.3
2685 Female, age 94, left hemisphere 187.9
2609 Male, age 75, right hemisphere 176.7
2827 Female, age 67, right hemisphere 148.1
Central amygdala
nTPM: 196.2
1905 Male, age 76, both hemispheres 247.2
2701 Female, age 91, right hemisphere 186.9
2239 Male, age 80, left hemisphere 186.2
2515 Male, age 75, right hemisphere 183.9
2826 Female, age 94, left hemisphere 176.8
Corticomedial amygdala
nTPM: 195.3
2429 Female, age 94, left hemisphere 208.1
2829 Male, age 80, left hemisphere 206.9
2242 Female, age 91, right hemisphere 200.7
2240 Male, age 76, both hemispheres 199.5
2428 Male, age 75, right hemisphere 196.5
2535 Female, age 67, right hemisphere 160.4
Lateral amygdala
nTPM: 185.4
1883 Male, age 76, both hemispheres 253.3
2534 Female, age 94, left hemisphere 194.5
2516 Male, age 75, right hemisphere 184.8
2255 Female, age 91, right hemisphere 173.0
2256 Male, age 80, left hemisphere 163.0
2830 Female, age 67, right hemisphere 143.9
Stria terminalis, bed nucleus
nTPM: 235.9
1974 Female, age 91, both hemispheres 277.9
2486 Female, age 94, both hemispheres 244.9
2201 Male, age 74, unknown 184.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 178.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 178.3
Samples: 152

Max nTPM: 432.7
Min nTPM: 53.7
Std nTPM: 84.5
Median nTPM: 163.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 432.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 421.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 397.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 397.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 381.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 375.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 363.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 361.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 359.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 342.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 340.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 300.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 295.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 295.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 290.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 289.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 283.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 281.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 278.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 277.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 277.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 274.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 274.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 268.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 266.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 262.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 257.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 252.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 247.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 241.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 241.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 240.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 238.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 237.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 236.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 234.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 233.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 233.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 230.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 226.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 224.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 224.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 222.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 218.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 217.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 212.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 211.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 208.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 208.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 207.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 202.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 202.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 201.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 199.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 194.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 193.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 193.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 190.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 184.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 182.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 181.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 181.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 180.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 179.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 178.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 177.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 177.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 174.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 172.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 171.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 171.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 171.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 169.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 166.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 166.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 165.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 161.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 161.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 157.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 156.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 154.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 153.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 152.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 151.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 149.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 148.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 148.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 147.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 146.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 145.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 143.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 141.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 140.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 140.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 139.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 137.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 137.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 136.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 132.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 128.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 128.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 125.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 123.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 123.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 120.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 119.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 118.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 118.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 117.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 112.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 111.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 110.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 109.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 109.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 109.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 108.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 108.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 108.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 105.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 104.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 104.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 103.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 100.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 99.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 99.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 99.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 96.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 93.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 90.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 89.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 89.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 88.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 86.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 85.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 84.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 84.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 83.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 80.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 76.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 76.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 75.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 75.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 75.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 73.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 72.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 65.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 64.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 63.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 60.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 53.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 193.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 193.2
FF:10151-102I7 76 years, female 193.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 176.7
Pig sample Sample description nTPM
Amygdala
nTPM: 176.7
Samples: 4

Max nTPM: 260.0
Min nTPM: 139.0
Sample A Female 260.0
Sample B Female 139.0
Sample C Male 141.7
Sample D Male 166.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 940.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 940.1
Samples: 4

Max nTPM: 1011.5
Min nTPM: 892.2
Sample A Male 1011.5
Sample B Male 904.7
Sample C Female 952.0
Sample D Female 892.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 26.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 26.3
69752155 Antisense, RP_050505_01_C05, Mouse strain C57BL/6J (56 days, male) 26.3

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