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TISSUE PRIMARY DATA PONS AND MEDULLA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:131.4 nTPM
HPA:131.4 nTPM
FANTOM5:386.6 Scaled Tags Per Million

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 131.4
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 116.0
2188 Female, age 91, both hemispheres 125.2
2301 Female, age 85, both hemispheres 117.2
1984 Male, age 76, both hemispheres 111.2
2090 Male, age 80, both hemispheres 110.4
Area postrema
nTPM: 100.7
2054 Male, age 76, both hemispheres 105.5
2306 Male, age 80, both hemispheres 98.7
2799 Male, age 61, both hemispheres 97.8
Cuneate nuclei
nTPM: 101.6
2381 Male, age 80, both hemispheres 105.0
2376 Male, age 61, both hemispheres 104.6
2131 Male, age 76, both hemispheres 95.1
Dorsal cochlear nucleus
nTPM: 110.5
2187 Female, age 91, both hemispheres 122.3
2802 Male, age 74, right hemisphere 122.2
2058 Male, age 76, both hemispheres 104.6
2370 Male, age 61, both hemispheres 101.8
2378 Male, age 80, both hemispheres 101.6
Dorsal medullary reticular nucleus
nTPM: 108.8
2040 Female, age 85, both hemispheres 121.3
2373 Male, age 61, both hemispheres 106.3
2088 Male, age 76, both hemispheres 98.8
Dorsal motor vagal complex
nTPM: 109.5
2000 Male, age 74, unknown 118.9
2813 Female, age 72, unknown 118.6
2133 Female, age 91, both hemispheres 116.2
2643 Male, age 74, both hemispheres 111.7
2844 Male, age 55, unknown 111.6
2797 Male, age 61, both hemispheres 101.9
2185 Male, age 76, both hemispheres 98.6
2807 Female, age 85, both hemispheres 98.4
Dorsal tegmental nucleus
nTPM: 112.0
2326 Male, age 74, both hemispheres 132.4
2083 Male, age 80, both hemispheres 114.5
1936 Male, age 76, left hemisphere 111.4
2358 Male, age 61, both hemispheres 89.6
Dorsolateral tegmental area
nTPM: 113.9
2360 Male, age 74, both hemispheres 123.5
2751 Female, age 85, both hemispheres 121.1
2654 Male, age 80, both hemispheres 118.0
2141 Male, age 76, both hemispheres 110.6
2337 Male, age 61, both hemispheres 96.5
Gigantocellular reticular nuclei, medullary
nTPM: 118.0
2022 Male, age 76, right hemisphere 132.5
1876 Female, age 85, both hemispheres 124.4
2387 Female, age 91, both hemispheres 118.3
2462 Male, age 74, both hemispheres 116.5
2314 Male, age 61, both hemispheres 108.7
2310 Male, age 80, both hemispheres 107.7
Gigantocellular reticular nuclei, pars
nTPM: 110.1
2168 Male, age 76, both hemispheres 126.6
2336 Male, age 61, both hemispheres 109.8
2084 Female, age 85, both hemispheres 108.7
2706 Male, age 80, both hemispheres 103.4
2330 Male, age 80, both hemispheres 101.8
Inferior olive
nTPM: 116.2
2563 Male, age 74, both hemispheres 127.2
2085 Female, age 85, both hemispheres 126.6
2178 Male, age 61, both hemispheres 111.4
2379 Male, age 80, both hemispheres 109.2
2628 Female, age 91, both hemispheres 106.6
Kolliker-Fuse nucleus
nTPM: 114.6
2315 Male, age 76, right hemisphere 118.8
2793 Female, age 91, left hemisphere 116.4
2163 Male, age 80, both hemispheres 108.5
Lateral lemniscal nuclei
nTPM: 118.1
2169 Male, age 76, both hemispheres 134.8
2746 Female, age 85, left hemisphere 123.2
2320 Female, age 91, left hemisphere 111.5
2453 Male, age 74, right hemisphere 110.8
2036 Male, age 80, both hemispheres 110.4
Lateral medullary reticular nucleus
nTPM: 118.1
2305 Male, age 74, both hemispheres 140.5
2804 Female, age 91, both hemispheres 120.0
2190 Female, age 85, both hemispheres 116.2
2044 Male, age 76, both hemispheres 114.3
2374 Male, age 61, both hemispheres 111.7
2852 Male, age 80, both hemispheres 105.7
Lateral parabrachial nucleus
nTPM: 117.4
2139 Female, age 85, right hemisphere 125.8
2013 Male, age 80, both hemispheres 123.3
2792 Male, age 76, both hemispheres 120.8
2790 Male, age 61, both hemispheres 99.9
Lateral vestibular nucleus
nTPM: 107.4
2311 Male, age 80, both hemispheres 110.3
2184 Male, age 76, both hemispheres 104.5
Locus coeruleus
nTPM: 116.2
2788 Male, age 74, unknown 138.6
2014 Male, age 55, unknown 118.7
2720 Male, age 74, both hemispheres 118.3
2123 Female, age 91, both hemispheres 113.8
2162 Male, age 80, both hemispheres 112.2
2317 Female, age 72, unknown 106.9
1980 Male, age 76, both hemispheres 104.8
Medial olivary nucleus
nTPM: 118.7
2138 Female, age 91, both hemispheres 126.0
1943 Male, age 61, both hemispheres 119.5
1962 Male, age 76, both hemispheres 115.7
2851 Male, age 80, both hemispheres 113.6
Medial parabrachial nucleus
nTPM: 114.4
2854 Male, age 80, both hemispheres 130.8
2170 Female, age 91, both hemispheres 126.5
2463 Female, age 85, right hemisphere 111.9
2786 Male, age 76, both hemispheres 107.4
2156 Male, age 61, both hemispheres 95.4
Medial periolivary nuclei
nTPM: 124.4
2063 Male, age 76, both hemispheres 138.8
2171 Female, age 85, both hemispheres 137.9
2791 Male, age 74, right hemisphere 130.0
2081 Male, age 80, both hemispheres 110.8
2458 Female, age 91, both hemispheres 104.2
Medial vestibular nucleus
nTPM: 115.3
2801 Male, age 74, both hemispheres 127.9
2803 Female, age 91, both hemispheres 125.6
2743 Female, age 85, both hemispheres 117.0
2093 Male, age 80, both hemispheres 114.8
2134 Male, age 76, both hemispheres 107.4
2624 Male, age 61, both hemispheres 99.1
Motor facial nucleus
nTPM: 120.0
2062 Male, age 76, both hemispheres 136.4
2697 Female, age 85, both hemispheres 127.6
2365 Male, age 74, right hemisphere 125.9
2327 Male, age 80, both hemispheres 114.7
2795 Female, age 91, both hemispheres 108.6
2126 Male, age 61, both hemispheres 106.8
Motor hypoglossal nucleus
nTPM: 109.6
2125 Female, age 91, both hemispheres 128.5
2132 Female, age 85, both hemispheres 122.2
2461 Male, age 61, both hemispheres 99.9
2182 Male, age 80, both hemispheres 98.9
2277 Male, age 76, both hemispheres 98.3
Motor trigeminal nucleus
nTPM: 108.7
2079 Male, age 80, both hemispheres 115.7
2560 Male, age 74, both hemispheres 114.3
2309 Male, age 76, both hemispheres 111.7
2321 Female, age 91, both hemispheres 102.4
2335 Male, age 61, both hemispheres 99.4
Nuclei of the trapezoid body
nTPM: 127.2
2735 Female, age 85, both hemispheres 141.9
1983 Male, age 76, both hemispheres 135.5
2159 Male, age 61, both hemispheres 133.7
2166 Male, age 80, both hemispheres 117.5
2368 Female, age 91, both hemispheres 107.5
Nucleus ambiguus
nTPM: 102.9
2071 Male, age 76, both hemispheres 115.7
2096 Female, age 85, both hemispheres 90.1
Nucleus cuneatus
nTPM: 103.6
2564 Male, age 74, both hemispheres 115.2
2380 Male, age 80, both hemispheres 107.7
2808 Female, age 85, both hemispheres 105.6
2562 Male, age 61, both hemispheres 102.5
2805 Female, age 91, both hemispheres 99.7
2100 Male, age 76, both hemispheres 90.8
Nucleus gracilis
nTPM: 110.3
2627 Male, age 74, both hemispheres 128.9
2382 Male, age 80, both hemispheres 105.1
2299 Female, age 85, both hemispheres 97.0
Nucleus raphe magnus
nTPM: 126.2
2160 Male, age 61, both hemispheres 142.9
2172 Female, age 85, both hemispheres 135.5
2455 Male, age 74, both hemispheres 126.5
2328 Male, age 80, both hemispheres 119.2
2051 Male, age 76, both hemispheres 118.6
2459 Female, age 91, both hemispheres 114.8
Nucleus raphe obscurus
nTPM: 116.1
2845 Female, age 85, midline 126.4
2800 Male, age 61, midline 112.0
2142 Male, age 76, midline 109.9
Nucleus raphe pallidus
nTPM: 114.3
1924 Male, age 61, midline 121.0
2183 Male, age 80, midline 113.6
2145 Male, age 76, midline 108.4
Nucleus tractus solitarii
nTPM: 117.4
2144 Female, age 91, right hemisphere 163.8
2656 Male, age 76, both hemispheres 115.6
2191 Female, age 85, both hemispheres 100.7
2307 Male, age 80, both hemispheres 89.3
Paramedian reticular nucleus
nTPM: 120.9
2052 Male, age 76, both hemispheres 131.8
2050 Female, age 85, both hemispheres 123.8
2057 Male, age 80, both hemispheres 115.4
2313 Male, age 61, both hemispheres 112.4
Parvicellular reticular nuclei
nTPM: 108.9
2095 Male, age 76, both hemispheres 115.8
2119 Male, age 80, both hemispheres 109.7
2558 Male, age 74, both hemispheres 101.3
Parvicellular reticular nuclei, medullary
nTPM: 116.6
2189 Female, age 91, both hemispheres 124.8
2181 Male, age 80, left hemisphere 119.4
2091 Female, age 85, both hemispheres 105.6
Peritrigeminal nucleus
nTPM: 112.3
2179 Male, age 61, both hemispheres 114.5
2136 Male, age 76, both hemispheres 112.0
2067 Female, age 85, both hemispheres 110.5
Pontine nuclei
nTPM: 131.4
2454 Male, age 74, left hemisphere 147.8
2727 Male, age 61, right hemisphere 145.7
1863 Male, age 55, unknown 144.7
2109 Female, age 72, unknown 133.1
2787 Female, age 85, both hemispheres 130.3
1968 Male, age 76, left hemisphere 126.4
2319 Female, age 91, both hemispheres 120.9
2115 Male, age 80, left hemisphere 102.5
Pontine raphe nucleus
nTPM: 126.6
2122 Female, age 85, midline 137.7
2853 Male, age 76, midline 115.5
Posteroventral cochlear nucleus
nTPM: 114.1
2752 Female, age 85, both hemispheres 126.2
2135 Female, age 91, both hemispheres 117.0
2341 Male, age 80, both hemispheres 114.0
2070 Male, age 76, both hemispheres 107.8
2371 Male, age 61, both hemispheres 105.4
Prepositus hypoglossal nucleus
nTPM: 115.8
2855 Female, age 85, right hemisphere 127.7
2086 Male, age 80, both hemispheres 103.9
Principal sensory trigeminal nucleus
nTPM: 120.7
2008 Male, age 80, left hemisphere 131.9
2158 Male, age 61, both hemispheres 129.7
2367 Female, age 91, left hemisphere 117.3
2324 Male, age 76, both hemispheres 104.1
Reticular pontine nucleus, caudal
nTPM: 119.4
2559 Male, age 74, both hemispheres 126.0
2092 Male, age 76, both hemispheres 123.8
2457 Female, age 91, both hemispheres 117.9
2332 Male, age 80, right hemisphere 110.0
Reticular pontine nucleus, oral
nTPM: 126.8
2361 Male, age 74, both hemispheres 137.9
2012 Female, age 85, both hemispheres 128.9
1939 Male, age 80, both hemispheres 125.2
2167 Male, age 76, both hemispheres 123.0
2366 Female, age 91, both hemispheres 119.0
Reticulotegmental nucleus
nTPM: 111.1
2325 Male, age 76, both hemispheres 116.8
2322 Female, age 91, both hemispheres 114.0
2452 Male, age 74, both hemispheres 113.0
2333 Male, age 80, both hemispheres 100.8
Spinal trigeminal nucleus, caudal
nTPM: 109.6
2390 Female, age 91, both hemispheres 114.4
2312 Male, age 61, both hemispheres 114.0
2642 Male, age 74, both hemispheres 111.5
2308 Male, age 80, both hemispheres 104.3
2447 Male, age 76, both hemispheres 103.6
Spinal trigeminal nucleus, interpolar
nTPM: 117.7
2389 Female, age 91, both hemispheres 130.8
2386 Female, age 85, both hemispheres 125.5
2066 Male, age 76, right hemisphere 118.8
2033 Male, age 80, both hemispheres 114.8
2625 Male, age 61, both hemispheres 98.4
Spinal trigeminal nucleus, oral
nTPM: 111.8
2737 Female, age 85, both hemispheres 117.2
1978 Male, age 76, both hemispheres 116.1
2164 Male, age 80, both hemispheres 102.0
Spinal vestibular nucleus
nTPM: 117.0
2806 Female, age 85, both hemispheres 131.6
2186 Female, age 91, both hemispheres 128.6
2780 Male, age 80, both hemispheres 115.3
2384 Male, age 74, both hemispheres 112.6
2748 Male, age 76, both hemispheres 110.5
2796 Male, age 61, both hemispheres 103.5
Subcoeruleus area
nTPM: 120.7
1958 Male, age 80, both hemispheres 128.8
2369 Female, age 85, left hemisphere 120.1
2451 Male, age 74, both hemispheres 119.4
2323 Female, age 91, left hemisphere 119.2
2089 Male, age 76, left hemisphere 115.8
Superior olive
nTPM: 126.4
1875 Female, age 85, both hemispheres 142.8
2364 Male, age 74, right hemisphere 139.0
2020 Male, age 76, both hemispheres 133.3
2329 Male, age 80, right hemisphere 112.9
2561 Female, age 91, both hemispheres 104.1
Superior vestibular nucleus
nTPM: 124.9
2383 Male, age 74, both hemispheres 145.2
2015 Male, age 80, both hemispheres 123.1
2061 Male, age 76, both hemispheres 106.3
Ventral medullary reticular nucleus
nTPM: 112.6
2372 Male, age 61, both hemispheres 119.8
2060 Male, age 76, both hemispheres 105.4
Ventral periolivary nuclei
nTPM: 126.4
2130 Female, age 85, both hemispheres 138.9
2023 Male, age 76, both hemispheres 135.8
2165 Male, age 80, both hemispheres 126.2
2794 Female, age 91, left hemisphere 104.8
Ventrolateral medulla, A1-C1 cell groups
nTPM: 112.3
2741 Female, age 85, both hemispheres 115.5
2302 Female, age 91, both hemispheres 114.5
1986 Male, age 76, both hemispheres 113.6
2180 Male, age 61, both hemispheres 112.6
2118 Male, age 80, both hemispheres 105.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 118.1
2840 Female, age 85, both hemispheres 129.0
1959 Male, age 76, both hemispheres 126.5
2449 Male, age 74, both hemispheres 125.3
2161 Male, age 80, both hemispheres 116.9
2456 Female, age 91, both hemispheres 106.5
2359 Male, age 61, both hemispheres 104.3

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 386.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 245.2
FF:10182-103D2 60 years, female 260.7
FF:10165-103B3 76 years, female 229.6
Medulla oblongata
Scaled Tags Per Million: 233.1
FF:10174-103C3 60 years, female 295.1
FF:10155-103A2 76 years, female 211.2
FF:10038-101F2 18-64 years, mixed 193.0
Pons
Scaled Tags Per Million: 386.6
FF:10033-101E6 18-54 years, mixed 386.6

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