MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:152.3 nTPM
HPA:152.3 nTPM
GTEx:200.4 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:248.0 nTPM
Mouse:259.2 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 152.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.5
2411 Female, age 72, unknown 147.7
1870 Female, age 42, unknown 142.5
1830 Male, age 51, unknown 140.9
2019 Male, age 18, unknown 138.3
1833 Male, age 53, unknown 131.3
2666 Male, age 74, left hemisphere 129.3
2828 Female, age 72, unknown 127.7
1827 Male, age 72, unknown 125.2
2219 Male, age 76, both hemispheres 111.3
2586 Male, age 75, left hemisphere 100.3
Dorsal raphe nucleus
nTPM: 115.6
2750 Male, age 76, both hemispheres 175.0
1828 Male, age 53, unknown 107.2
2298 Female, age 72, unknown 99.4
2047 Male, age 72, unknown 98.2
2016 Female, age 72, unknown 98.0
Inferior colliculus
nTPM: 111.3
1848 Female, age 42, unknown 116.8
2849 Male, age 72, unknown 113.8
2097 Female, age 72, unknown 108.2
1890 Male, age 53, unknown 106.5
Median raphe nucleus
nTPM: 126.0
2220 Male, age 76, midline 126.0
Pedunculopontine tegmental nucleus
nTPM: 133.4
2334 Male, age 80, both hemispheres 135.2
2338 Male, age 61, both hemispheres 133.2
1921 Female, age 85, both hemispheres 131.7
Periaquaductal grey, anterior
nTPM: 108.4
1947 Male, age 18, unknown 113.2
2502 Female, age 75, unknown 107.1
1795 Male, age 51, unknown 104.9
Periaquaductal grey, dorsal
nTPM: 98.5
2464 Female, age 72, unknown 110.4
1831 Male, age 72, unknown 107.5
1840 Male, age 53, unknown 91.8
2850 Male, age 76, both hemispheres 84.5
Periaquaductal grey, lateral
nTPM: 103.4
2272 Male, age 74, both hemispheres 116.8
2053 Male, age 18, unknown 108.5
2140 Male, age 76, both hemispheres 84.7
Pretectal area
nTPM: 122.1
1817 Female, age 42, unknown 145.9
1815 Male, age 53, unknown 145.4
2007 Male, age 72, unknown 139.7
1944 Female, age 72, unknown 139.6
2316 Male, age 76, right hemisphere 125.4
1816 Male, age 51, unknown 117.4
2825 Male, age 18, unknown 113.3
2273 Male, age 74, both hemispheres 111.1
2407 Male, age 75, both hemispheres 109.9
2224 Female, age 72, unknown 105.8
2667 Female, age 75, unknown 89.0
Red nucleus
nTPM: 152.3
2823 Male, age 76, right hemisphere 174.4
1865 Male, age 51, unknown 173.7
2588 Male, age 74, left hemisphere 162.2
1904 Male, age 53, unknown 157.7
2725 Female, age 75, unknown 154.7
2785 Male, age 18, unknown 154.4
2503 Female, age 72, unknown 150.6
1954 Female, age 42, unknown 148.2
1821 Female, age 72, unknown 145.3
2227 Male, age 72, unknown 142.4
2769 Male, age 72, unknown 141.7
2584 Male, age 75, left hemisphere 122.9
Substantia nigra
nTPM: 107.0
1889 Female, age 72, unknown 135.4
2590 Female, age 75, unknown 126.6
2583 Male, age 75, right hemisphere 111.2
1851 Male, age 51, unknown 108.5
2409 Female, age 72, unknown 106.3
1941 Male, age 53, unknown 99.6
1916 Female, age 42, unknown 98.3
2241 Male, age 72, unknown 97.6
2665 Male, age 74, both hemispheres 94.9
2699 Male, age 18, unknown 91.2
Superior colliculus
nTPM: 132.9
2668 Female, age 75, unknown 156.2
1913 Female, age 42, unknown 147.1
2587 Male, age 74, left hemisphere 141.3
1995 Male, age 72, unknown 138.7
2087 Female, age 72, unknown 135.3
1895 Male, age 76, right hemisphere 134.9
1796 Male, age 53, unknown 134.0
2261 Male, age 18, unknown 132.9
1839 Male, age 51, unknown 115.0
2664 Male, age 75, both hemispheres 93.4
Ventral tegmental area
nTPM: 118.5
2223 Female, age 72, unknown 140.7
2218 Male, age 76, both hemispheres 119.5
2410 Female, age 72, unknown 119.3
2021 Male, age 53, unknown 112.2
1942 Male, age 51, unknown 111.4
1915 Female, age 42, unknown 107.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 200.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 200.4
Samples: 139

Max nTPM: 932.7
Min nTPM: 30.7
Std nTPM: 151.6
Median nTPM: 158.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 932.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 833.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 738.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 667.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 648.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 559.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 466.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 465.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 436.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 423.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 421.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 248.0
Pig sample Sample description nTPM
Midbrain
nTPM: 248.0
Samples: 4

Max nTPM: 436.8
Min nTPM: 162.6
Sample A Female 436.8
Sample B Female 196.8
Sample C Male 195.8
Sample D Male 162.6
Periaqueductal gray
nTPM: 139.1
Samples: 3

Max nTPM: 151.0
Min nTPM: 125.7
Sample B Female 151.0
Sample C Male 125.7
Sample D Male 140.6
Substantia nigra
nTPM: 192.6
Samples: 4

Max nTPM: 297.0
Min nTPM: 104.3
Sample A Female 202.5
Sample B Female 104.3
Sample C Male 166.7
Sample D Male 297.0
Superior colliculi
nTPM: 194.4
Samples: 4

Max nTPM: 238.5
Min nTPM: 102.1
Sample A Female 217.0
Sample B Female 102.1
Sample C Male 220.1
Sample D Male 238.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 259.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 259.2
Samples: 4

Max nTPM: 275.1
Min nTPM: 248.3
Sample A Male 275.1
Sample B Male 248.3
Sample C Female 253.3
Sample D Female 260.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
1007 Antisense, RP_Baylor_103218, Mouse strain C57BL/6J (56 days, male) 8.3
1006 Antisense, RP_Baylor_103218, Mouse strain C57BL/6J (56 days, male) 7.7
1008 Sense, RPS_Baylor_37084, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.