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CLCA1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1399.9 nTPM
HPA:1399.9 nTPM
GTEx:307.3 nTPM
FANTOM5:1743.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA052787Antibody HPA059301
Enterocytes -Not detected
Enterocytes - Microvilli -Not detected
Glandular cells High-
Goblet cells -High





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 1399.9
overview
Male, age 65
Small intestine sample 232
nTPM: 849.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1481.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 1829.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 1438.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 307.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 307.3
Samples: 187

Max nTPM: 1598.0
Min nTPM: 0.0
Std nTPM: 350.2
Median nTPM: 167.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1598.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 1593.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1482.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1184.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1168.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1117.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 1111.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1061.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1021.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 997.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 993.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 992.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 962.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 940.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 923.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 915.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 904.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 874.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 873.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 860.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 827.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 813.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 812.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 756.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 707.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 695.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 691.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 690.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 682.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 652.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 633.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 631.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 629.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 626.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 623.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 622.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 618.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 591.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 589.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 570.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 560.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 518.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 516.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 515.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 514.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 512.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 508.7
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 473.0
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 457.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 456.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 441.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 440.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 432.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 430.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 426.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 424.2
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 412.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 409.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 397.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 396.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 393.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 376.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 371.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 347.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 340.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 331.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 322.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 318.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 306.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 281.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 281.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 270.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 268.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 264.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 254.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 254.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 249.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 234.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 234.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 230.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 224.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 223.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 217.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 209.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 202.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 195.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 193.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 191.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 190.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 190.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 178.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 173.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 173.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 167.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 166.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 163.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 162.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 158.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 155.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 151.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 151.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 150.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 145.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 143.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 140.6
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 127.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 127.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 125.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 124.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 121.3
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 114.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 113.1
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 111.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 108.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 100.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 96.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 94.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 91.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 85.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 74.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 67.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 65.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 60.4
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 56.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 56.0
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 54.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 54.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 54.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 52.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 52.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 51.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 36.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 35.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 35.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 33.1
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 30.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 29.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 28.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 26.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 26.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 21.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 20.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 20.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 19.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 17.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 14.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 13.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 13.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 12.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 12.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 11.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 9.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 9.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 9.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 8.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 8.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 7.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 7.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 5.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 5.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 5.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 5.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 4.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 4.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 3.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1743.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1743.9
FF:10024-101D6 15,40,85 years, mixed 1743.9

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