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CD74
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  • CD74
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Low
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2438.8 nTPM
HPA:2438.8 nTPM
GTEx:1997.8 nTPM
FANTOM5:4451.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA010592Antibody CAB002506Antibody CAB079994
Endocrine cells -Not detected-
Enterocytes -Low-
Enterocytes - Microvilli -Not detected-
Glandular cells High-Medium
Goblet cells -Not detected-
Paneth cells -High-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 2438.8
overview
Male, age 65
Small intestine sample 232
nTPM: 2234.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2288.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2994.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2238

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1997.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1997.8
Samples: 187

Max nTPM: 6584.9
Min nTPM: 278.1
Std nTPM: 1200.6
Median nTPM: 1916.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 6584.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 4962.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 4936.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4918.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 4601.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 4593.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 4514.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 4327.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 4325.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 4189.0
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 4016.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 3985.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 3928.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3927.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 3905.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 3836.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 3788.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 3693.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 3688.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3674.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 3673.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 3530.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 3522.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 3510.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 3484.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 3373.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 3330.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 3330.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 3300.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 3271.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 3264.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 3257.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 3225.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3207.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 3186.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 3103.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 3103.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 3049.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2992.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 2874.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2868.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2786.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2750.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 2748.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2685.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2677.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 2652.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2626.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2611.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2602.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2597.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 2591.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2583.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2582.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2510.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2458.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2448.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 2441.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2410.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2396.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2393.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2390.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2375.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 2371.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 2336.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2330.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2327.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2316.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2313.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 2284.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 2275.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2232.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 2208.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2203.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2198.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 2183.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2166.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2157.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 2112.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 2105.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2080.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2072.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2064.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 2017.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 1986.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1978.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1978.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1973.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1967.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1966.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1957.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1955.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 1925.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1916.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1903.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1902.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1883.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1860.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1809.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1808.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1790.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1744.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 1706.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1679.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1669.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1657.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1648.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1643.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1636.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1623.3
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1619.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1601.2
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1597.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1567.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1547.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1511.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1504.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1498.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1473.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1444.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1433.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1427.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1408.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1398.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1379.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1351.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 1351.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1336.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1336.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1305.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1292.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1285.7
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1255.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1220.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1207.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1133.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1124.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1121.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1090.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1054.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1017.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1011.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 994.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 955.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 945.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 928.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 924.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 914.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 910.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 818.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 812.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 803.0
GTEX-1192X-2526-SM-59868 50-59 years, male 738.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 704.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 663.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 658.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 646.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 638.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 615.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 612.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 603.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 577.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 551.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 548.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 499.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 449.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 447.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 446.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 439.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 431.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 426.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 421.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 417.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 415.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 409.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 403.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 396.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 386.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 374.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 371.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 359.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 340.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 330.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 325.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 319.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 309.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 278.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 4451.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 4451.9
FF:10024-101D6 15,40,85 years, mixed 4451.9

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