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BRAIN CAUDATE Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:617.2 nTPM
FANTOM5:1634.7 Scaled Tags Per Million
Pig:309.8 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA023676
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 617.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 617.2
Samples: 246

Max nTPM: 1652.6
Min nTPM: 63.1
Std nTPM: 351.7
Median nTPM: 592.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1652.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1609.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1376.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1366.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1326.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1310.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1304.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 1288.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1281.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1278.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1240.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1239.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1238.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1235.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1226.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1219.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1214.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1205.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1172.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1169.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1166.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1150.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1150.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1146.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1145.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1132.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1130.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1127.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1099.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1069.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1064.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 1062.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1062.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1059.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1039.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1034.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1021.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1018.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 999.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 997.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 959.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 955.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 955.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 954.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 951.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 950.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 947.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 943.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 934.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 931.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 906.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 906.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 905.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 903.5
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 901.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 896.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 890.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 889.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 882.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 881.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 880.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 875.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 873.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 869.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 863.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 854.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 850.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 843.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 837.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 837.2
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 836.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 822.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 816.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 815.7
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 802.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 801.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 800.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 792.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 788.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 774.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 774.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 772.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 763.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 754.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 752.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 749.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 745.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 744.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 741.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 739.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 738.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 734.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 727.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 724.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 711.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 704.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 703.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 702.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 698.6
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 681.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 679.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 673.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 671.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 669.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 665.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 656.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 649.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 648.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 644.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 644.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 642.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 639.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 632.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 631.9
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 616.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 610.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 608.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 603.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 600.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 599.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 597.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 595.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 594.1
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 590.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 575.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 573.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 572.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 568.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 563.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 552.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 548.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 547.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 546.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 541.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 539.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 536.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 534.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 534.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 532.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 532.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 531.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 529.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 513.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 505.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 500.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 496.3
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 493.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 492.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 491.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 482.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 477.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 471.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 469.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 457.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 454.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 453.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 451.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 444.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 442.8
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 442.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 438.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 428.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 427.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 419.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 408.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 407.5
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 404.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 400.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 378.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 375.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 368.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 364.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 363.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 349.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 342.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 341.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 338.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 332.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 331.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 330.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 328.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 320.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 308.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 303.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 298.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 296.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 293.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 289.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 287.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 280.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 279.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 278.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 277.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 277.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 274.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 266.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 258.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 255.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 253.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 251.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 242.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 241.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 236.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 233.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 232.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 232.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 224.3
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 223.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 220.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 213.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 212.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 210.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 208.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 198.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 197.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 192.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 190.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 186.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 182.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 182.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 181.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 180.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 177.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 171.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 169.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 167.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 162.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 154.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 150.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 150.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 146.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 142.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 139.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 135.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 133.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 130.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 122.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 117.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 115.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 115.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 101.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 76.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 69.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 66.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 66.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 63.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1634.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1634.7
FF:10164-103B2 76 years, female 1634.7

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 309.8
Pig sample Sample description nTPM
Caudate
nTPM: 309.8
Samples: 4

Max nTPM: 382.7
Min nTPM: 205.1
Sample A Female 205.1
Sample B Female 324.6
Sample C Male 382.7
Sample D Male 326.9

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