MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:125.4 nTPM
HPA:125.4 nTPM
GTEx:110.3 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:90.0 nTPM
Mouse:99.8 nTPM
Allen mouse:4.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 125.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 99.5
2586 Male, age 75, left hemisphere 109.4
1827 Male, age 72, unknown 107.1
2828 Female, age 72, unknown 105.5
2019 Male, age 18, unknown 100.5
2666 Male, age 74, left hemisphere 99.6
2219 Male, age 76, both hemispheres 98.9
1870 Female, age 42, unknown 95.1
2411 Female, age 72, unknown 95.0
1833 Male, age 53, unknown 92.9
1830 Male, age 51, unknown 90.8
Dorsal raphe nucleus
nTPM: 117.2
2298 Female, age 72, unknown 144.0
2047 Male, age 72, unknown 119.3
2016 Female, age 72, unknown 118.8
1828 Male, age 53, unknown 104.3
2750 Male, age 76, both hemispheres 99.6
Inferior colliculus
nTPM: 104.9
2097 Female, age 72, unknown 110.3
1848 Female, age 42, unknown 104.1
1890 Male, age 53, unknown 103.5
2849 Male, age 72, unknown 101.7
Median raphe nucleus
nTPM: 108.4
2220 Male, age 76, midline 108.4
Pedunculopontine tegmental nucleus
nTPM: 96.9
1921 Female, age 85, both hemispheres 100.8
2334 Male, age 80, both hemispheres 99.2
2338 Male, age 61, both hemispheres 90.8
Periaquaductal grey, anterior
nTPM: 117.6
1795 Male, age 51, unknown 125.1
2502 Female, age 75, unknown 122.0
1947 Male, age 18, unknown 105.7
Periaquaductal grey, dorsal
nTPM: 120.9
1840 Male, age 53, unknown 138.4
2850 Male, age 76, both hemispheres 126.0
2464 Female, age 72, unknown 111.8
1831 Male, age 72, unknown 107.4
Periaquaductal grey, lateral
nTPM: 125.4
2272 Male, age 74, both hemispheres 132.4
2140 Male, age 76, both hemispheres 125.8
2053 Male, age 18, unknown 118.1
Pretectal area
nTPM: 118.0
2273 Male, age 74, both hemispheres 147.6
2224 Female, age 72, unknown 127.1
1816 Male, age 51, unknown 124.1
1944 Female, age 72, unknown 118.8
1815 Male, age 53, unknown 117.5
1817 Female, age 42, unknown 117.4
2007 Male, age 72, unknown 114.5
2407 Male, age 75, both hemispheres 112.6
2667 Female, age 75, unknown 110.8
2825 Male, age 18, unknown 105.8
2316 Male, age 76, right hemisphere 101.6
Red nucleus
nTPM: 91.8
2785 Male, age 18, unknown 105.2
2725 Female, age 75, unknown 96.2
1821 Female, age 72, unknown 93.0
1904 Male, age 53, unknown 92.6
2769 Male, age 72, unknown 92.5
2227 Male, age 72, unknown 92.3
2503 Female, age 72, unknown 92.1
2584 Male, age 75, left hemisphere 91.7
1954 Female, age 42, unknown 90.8
1865 Male, age 51, unknown 87.7
2823 Male, age 76, right hemisphere 84.5
2588 Male, age 74, left hemisphere 83.4
Substantia nigra
nTPM: 110.9
1916 Female, age 42, unknown 123.2
1851 Male, age 51, unknown 118.7
2241 Male, age 72, unknown 114.8
2699 Male, age 18, unknown 114.7
2590 Female, age 75, unknown 112.4
1889 Female, age 72, unknown 107.8
2583 Male, age 75, right hemisphere 106.2
1941 Male, age 53, unknown 104.9
2665 Male, age 74, both hemispheres 104.9
2409 Female, age 72, unknown 101.7
Superior colliculus
nTPM: 109.3
2664 Male, age 75, both hemispheres 130.6
1796 Male, age 53, unknown 116.4
2087 Female, age 72, unknown 116.0
2261 Male, age 18, unknown 113.3
2587 Male, age 74, left hemisphere 110.8
1995 Male, age 72, unknown 106.7
1839 Male, age 51, unknown 105.1
2668 Female, age 75, unknown 102.1
1913 Female, age 42, unknown 97.6
1895 Male, age 76, right hemisphere 94.8
Ventral tegmental area
nTPM: 109.1
2410 Female, age 72, unknown 115.1
1915 Female, age 42, unknown 114.0
2021 Male, age 53, unknown 112.0
1942 Male, age 51, unknown 109.2
2218 Male, age 76, both hemispheres 105.8
2223 Female, age 72, unknown 98.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 110.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 110.3
Samples: 139

Max nTPM: 249.9
Min nTPM: 22.4
Std nTPM: 35.4
Median nTPM: 106.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 249.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 219.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 217.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 195.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 195.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 170.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 170.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 166.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 165.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 164.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 161.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.0
Pig sample Sample description nTPM
Midbrain
nTPM: 48.7
Samples: 4

Max nTPM: 51.4
Min nTPM: 45.6
Sample A Female 50.1
Sample B Female 51.4
Sample C Male 47.8
Sample D Male 45.6
Periaqueductal gray
nTPM: 90.0
Samples: 3

Max nTPM: 115.6
Min nTPM: 70.0
Sample B Female 70.0
Sample C Male 115.6
Sample D Male 84.3
Substantia nigra
nTPM: 52.3
Samples: 4

Max nTPM: 63.5
Min nTPM: 29.4
Sample A Female 61.0
Sample B Female 63.5
Sample C Male 55.1
Sample D Male 29.4
Superior colliculi
nTPM: 39.6
Samples: 4

Max nTPM: 48.5
Min nTPM: 29.9
Sample A Female 48.5
Sample B Female 34.7
Sample C Male 29.9
Sample D Male 45.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.8
Samples: 4

Max nTPM: 101.6
Min nTPM: 98.2
Sample A Male 100.4
Sample B Male 101.6
Sample C Female 98.2
Sample D Female 99.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.5
2219 Antisense, RP_040604_01_A03, Mouse strain C57BL/6J (56 days, male) 4.5
2218 Antisense, RP_040604_01_A03, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.