MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:102.9 nTPM
HPA:102.9 nTPM
GTEx:77.4 nTPM
FANTOM5:186.7 Scaled Tags Per Million
Pig:71.0 nTPM
Mouse:85.0 nTPM
Allen mouse:7.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 98.7
2586 Male, age 75, left hemisphere 111.6
2019 Male, age 18, unknown 100.3
1830 Male, age 51, unknown 99.2
2666 Male, age 74, left hemisphere 98.8
2411 Female, age 72, unknown 98.4
1870 Female, age 42, unknown 98.1
1833 Male, age 53, unknown 97.9
1827 Male, age 72, unknown 96.3
2828 Female, age 72, unknown 94.8
2219 Male, age 76, both hemispheres 91.6
Dorsal raphe nucleus
nTPM: 96.2
1828 Male, age 53, unknown 97.4
2750 Male, age 76, both hemispheres 97.2
2298 Female, age 72, unknown 97.1
2047 Male, age 72, unknown 95.9
2016 Female, age 72, unknown 93.5
Inferior colliculus
nTPM: 95.3
1890 Male, age 53, unknown 95.8
2097 Female, age 72, unknown 95.8
1848 Female, age 42, unknown 95.7
2849 Male, age 72, unknown 93.9
Median raphe nucleus
nTPM: 94.3
2220 Male, age 76, midline 94.3
Pedunculopontine tegmental nucleus
nTPM: 94.2
1921 Female, age 85, both hemispheres 97.4
2334 Male, age 80, both hemispheres 96.0
2338 Male, age 61, both hemispheres 89.4
Periaquaductal grey, anterior
nTPM: 95.2
2502 Female, age 75, unknown 96.9
1947 Male, age 18, unknown 96.0
1795 Male, age 51, unknown 92.8
Periaquaductal grey, dorsal
nTPM: 92.9
1840 Male, age 53, unknown 95.5
1831 Male, age 72, unknown 92.7
2850 Male, age 76, both hemispheres 92.1
2464 Female, age 72, unknown 91.4
Periaquaductal grey, lateral
nTPM: 92.4
2140 Male, age 76, both hemispheres 94.6
2053 Male, age 18, unknown 92.8
2272 Male, age 74, both hemispheres 89.8
Pretectal area
nTPM: 95.5
1817 Female, age 42, unknown 98.8
2007 Male, age 72, unknown 97.5
2825 Male, age 18, unknown 97.4
1815 Male, age 53, unknown 96.8
2407 Male, age 75, both hemispheres 96.7
1816 Male, age 51, unknown 96.2
1944 Female, age 72, unknown 96.2
2667 Female, age 75, unknown 96.2
2316 Male, age 76, right hemisphere 93.4
2224 Female, age 72, unknown 93.2
2273 Male, age 74, both hemispheres 88.2
Red nucleus
nTPM: 100.7
1821 Female, age 72, unknown 105.7
2588 Male, age 74, left hemisphere 104.3
1904 Male, age 53, unknown 103.2
1865 Male, age 51, unknown 102.4
2584 Male, age 75, left hemisphere 100.6
1954 Female, age 42, unknown 100.5
2823 Male, age 76, right hemisphere 99.9
2725 Female, age 75, unknown 99.8
2503 Female, age 72, unknown 99.6
2785 Male, age 18, unknown 98.5
2227 Male, age 72, unknown 97.2
2769 Male, age 72, unknown 97.2
Substantia nigra
nTPM: 102.9
2241 Male, age 72, unknown 114.5
1916 Female, age 42, unknown 107.5
1851 Male, age 51, unknown 106.3
2583 Male, age 75, right hemisphere 106.0
2665 Male, age 74, both hemispheres 103.9
2409 Female, age 72, unknown 99.9
2699 Male, age 18, unknown 98.5
1889 Female, age 72, unknown 97.6
2590 Female, age 75, unknown 97.5
1941 Male, age 53, unknown 97.0
Superior colliculus
nTPM: 96.8
2664 Male, age 75, both hemispheres 101.3
2668 Female, age 75, unknown 99.7
2261 Male, age 18, unknown 97.2
2587 Male, age 74, left hemisphere 96.2
1895 Male, age 76, right hemisphere 96.1
1796 Male, age 53, unknown 96.0
1913 Female, age 42, unknown 96.0
1995 Male, age 72, unknown 96.0
1839 Male, age 51, unknown 95.2
2087 Female, age 72, unknown 93.8
Ventral tegmental area
nTPM: 99.1
2410 Female, age 72, unknown 103.2
1915 Female, age 42, unknown 100.0
2223 Female, age 72, unknown 99.8
2218 Male, age 76, both hemispheres 97.7
2021 Male, age 53, unknown 97.0
1942 Male, age 51, unknown 96.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.4
Samples: 139

Max nTPM: 177.0
Min nTPM: 48.2
Std nTPM: 18.7
Median nTPM: 73.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 177.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 164.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 122.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 119.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 118.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 114.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 107.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 105.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 105.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 104.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 186.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 186.7
FF:10158-103A5 76 years, female 186.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 71.0
Pig sample Sample description nTPM
Midbrain
nTPM: 71.0
Samples: 4

Max nTPM: 81.3
Min nTPM: 61.7
Sample A Female 81.3
Sample B Female 61.7
Sample C Male 74.0
Sample D Male 67.0
Periaqueductal gray
nTPM: 61.0
Samples: 3

Max nTPM: 66.4
Min nTPM: 56.8
Sample B Female 59.8
Sample C Male 66.4
Sample D Male 56.8
Substantia nigra
nTPM: 64.8
Samples: 4

Max nTPM: 73.1
Min nTPM: 61.4
Sample A Female 73.1
Sample B Female 62.0
Sample C Male 61.4
Sample D Male 62.7
Superior colliculi
nTPM: 67.2
Samples: 4

Max nTPM: 73.8
Min nTPM: 63.0
Sample A Female 73.8
Sample B Female 63.1
Sample C Male 63.0
Sample D Male 68.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.0
Samples: 4

Max nTPM: 91.6
Min nTPM: 77.3
Sample A Male 88.6
Sample B Male 77.3
Sample C Female 82.3
Sample D Female 91.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.7
294052 Antisense, RP_040617_02_F11, Mouse strain C57BL/6J (56 days, male) 8.5
67936005 Antisense, RP_041018_01_F01, Mouse strain C57BL/6J (56 days, male) 7.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.