BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:52.5 nTPM
HPA:52.5 nTPM
GTEx:57.6 nTPM
FANTOM5:301.0 Scaled Tags Per Million
Pig:67.2 nTPM
Mouse:120.2 nTPM
Allen mouse:4.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027320Antibody HPA055557
Glial cells HighNot detected
Neuronal cells LowLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 52.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 46.6
2481 Female, age 94, left hemisphere 54.5
2288 Male, age 75, left hemisphere 51.4
2290 Female, age 72, unknown 46.0
1781 Male, age 74, unknown 45.8
2846 Female, age 79, unknown 45.5
1857 Female, age 85, left hemisphere 45.4
1854 Male, age 80, left hemisphere 42.0
2289 Male, age 61, right hemisphere 41.8
Claustrum
nTPM: 46.9
2198 Male, age 80, both hemispheres 54.8
2284 Female, age 91, both hemispheres 48.8
1956 Male, age 74, unknown 47.8
2568 Male, age 61, both hemispheres 46.6
2392 Female, age 94, both hemispheres 46.0
2196 Female, age 79, unknown 45.4
2491 Male, age 75, both hemispheres 45.4
2292 Female, age 85, both hemispheres 45.1
2645 Female, age 72, unknown 42.3
Globus pallidus, externus
nTPM: 41.6
2395 Male, age 75, both hemispheres 48.0
2772 Female, age 79, unknown 46.3
1996 Male, age 80, right hemisphere 43.0
2646 Male, age 61, right hemisphere 38.1
2567 Female, age 72, unknown 32.4
Globus pallidus, internus
nTPM: 41.3
2287 Male, age 75, right hemisphere 54.7
2483 Female, age 94, right hemisphere 48.9
2778 Female, age 91, both hemispheres 41.4
1818 Male, age 74, unknown 39.5
2037 Male, age 80, right hemisphere 38.8
2566 Female, age 72, unknown 33.6
2111 Female, age 85, right hemisphere 32.1
Nucleus accumbens
nTPM: 46.2
2286 Male, age 75, left hemisphere 53.4
1856 Female, age 91, right hemisphere 51.6
2391 Female, age 94, left hemisphere 48.4
2698 Female, age 72, unknown 46.0
1806 Female, age 85, left hemisphere 45.6
1783 Male, age 74, unknown 45.2
2824 Male, age 61, right hemisphere 41.9
2732 Male, age 80, right hemisphere 37.8
Nucleus basalis of Meynert
nTPM: 39.7
2484 Female, age 94, left hemisphere 41.2
2821 Male, age 75, both hemispheres 40.8
2393 Male, age 80, right hemisphere 40.0
2569 Male, age 61, both hemispheres 36.6
Nucleus of the diagonal band
nTPM: 52.5
2775 Male, age 80, right hemisphere 59.5
1812 Female, age 91, both hemispheres 59.0
2195 Female, age 85, both hemispheres 52.4
1979 Male, age 74, unknown 46.7
2029 Male, age 61, right hemisphere 44.9
Olfactory tubercle
nTPM: 48.8
1998 Female, age 91, both hemispheres 52.2
1846 Male, age 80, right hemisphere 51.9
2856 Male, age 75, right hemisphere 45.8
2487 Female, age 94, left hemisphere 45.2
Putamen
nTPM: 42.5
2482 Female, age 94, left hemisphere 48.7
2466 Female, age 79, unknown 45.7
1937 Female, age 91, right hemisphere 44.6
1838 Male, age 80, right hemisphere 44.3
1829 Male, age 74, unknown 41.1
2647 Male, age 75, left hemisphere 38.3
2489 Female, age 72, unknown 35.0
Septal nuclei
nTPM: 47.3
1960 Male, age 74, unknown 56.3
2031 Female, age 72, unknown 56.1
2009 Female, age 91, both hemispheres 48.8
2629 Female, age 94, right hemisphere 47.0
2059 Female, age 85, both hemispheres 44.7
2199 Male, age 80, right hemisphere 40.7
2394 Male, age 61, left hemisphere 37.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 53.3
Samples: 246

Max nTPM: 107.0
Min nTPM: 28.9
Std nTPM: 11.7
Median nTPM: 51.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 107.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 95.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 92.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 91.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 89.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 84.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 83.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 79.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 78.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 76.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 76.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 57.6
Samples: 246

Max nTPM: 125.0
Min nTPM: 24.0
Std nTPM: 14.7
Median nTPM: 55.8
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 125.0
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 101.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 92.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 91.0
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 87.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 83.5
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 83.5
GTEX-1HB9E-0011-R6b-SM-A9G1P 50-59 years, male 83.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 83.4
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 83.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 82.7
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Brain - Putamen (basal ganglia)
Average nTPM: 51.4
Samples: 205

Max nTPM: 99.6
Min nTPM: 26.7
Std nTPM: 10.6
Median nTPM: 50.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 99.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 98.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 78.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 73.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 72.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 71.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 71.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 70.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 69.4
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 69.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 68.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 301.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 256.5
FF:10164-103B2 76 years, female 256.5
Globus pallidus
Scaled Tags Per Million: 249.3
FF:10175-103C4 60 years, female 298.3
FF:10161-103A8 76 years, female 200.3
Nucleus accumbens
Scaled Tags Per Million: 192.0
FF:10037-101F1 23-56 years, mixed 192.0
Putamen
Scaled Tags Per Million: 301.0
FF:10176-103C5 60 years, female 301.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 67.2
Pig sample Sample description nTPM
Caudate
nTPM: 55.7
Samples: 4

Max nTPM: 61.4
Min nTPM: 49.6
Sample A Female 55.1
Sample B Female 56.8
Sample C Male 61.4
Sample D Male 49.6
Putamen
nTPM: 67.2
Samples: 4

Max nTPM: 95.5
Min nTPM: 54.7
Sample A Female 61.1
Sample B Female 54.7
Sample C Male 95.5
Sample D Male 57.3
Septum
nTPM: 66.3
Samples: 4

Max nTPM: 80.4
Min nTPM: 57.7
Sample A Female 67.5
Sample B Female 57.7
Sample C Male 80.4
Sample D Male 59.6
Ventral pallidum
nTPM: 58.8
Samples: 4

Max nTPM: 64.1
Min nTPM: 52.3
Sample A Female 55.0
Sample B Female 63.7
Sample C Male 64.1
Sample D Male 52.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 120.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 104.6
Samples: 4

Max nTPM: 107.5
Min nTPM: 101.5
Sample A Male 107.5
Sample B Male 104.4
Sample C Female 101.5
Sample D Female 104.9
Septum
nTPM: 120.2
Samples: 4

Max nTPM: 132.3
Min nTPM: 109.2
Sample A Male 109.2
Sample B Male 132.3
Sample C Female 125.5
Sample D Female 113.9
Ventral forebrain
nTPM: 103.9
Samples: 4

Max nTPM: 112.2
Min nTPM: 98.4
Sample A Male 98.4
Sample B Male 104.5
Sample C Female 112.2
Sample D Female 100.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.5
69816936 Antisense, RP_050510_02_C05, Mouse strain C57BL/6J (56 days, male) 8.9
70795527 Antisense, RP_050712_01_G05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 3.8
69816936 Antisense, RP_050510_02_C05, Mouse strain C57BL/6J (56 days, male) 7.5
70795527 Antisense, RP_050712_01_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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