BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.5 nTPM
HPA:42.5 nTPM
GTEx:42.1 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:24.3 nTPM
Allen mouse:0.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA055125
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 37.9
2288 Male, age 75, left hemisphere 39.2
1781 Male, age 74, unknown 38.7
2846 Female, age 79, unknown 38.6
2290 Female, age 72, unknown 38.1
1857 Female, age 85, left hemisphere 37.7
1854 Male, age 80, left hemisphere 37.6
2481 Female, age 94, left hemisphere 37.6
2289 Male, age 61, right hemisphere 35.8
Claustrum
nTPM: 38.0
2392 Female, age 94, both hemispheres 39.8
2491 Male, age 75, both hemispheres 39.0
2568 Male, age 61, both hemispheres 39.0
1956 Male, age 74, unknown 38.4
2284 Female, age 91, both hemispheres 38.4
2198 Male, age 80, both hemispheres 38.2
2196 Female, age 79, unknown 37.5
2645 Female, age 72, unknown 36.8
2292 Female, age 85, both hemispheres 34.9
Globus pallidus, externus
nTPM: 35.7
2395 Male, age 75, both hemispheres 37.9
2772 Female, age 79, unknown 37.2
1996 Male, age 80, right hemisphere 35.0
2646 Male, age 61, right hemisphere 34.2
2567 Female, age 72, unknown 34.1
Globus pallidus, internus
nTPM: 35.3
2287 Male, age 75, right hemisphere 37.3
1818 Male, age 74, unknown 36.5
2483 Female, age 94, right hemisphere 36.0
2778 Female, age 91, both hemispheres 35.4
2037 Male, age 80, right hemisphere 35.0
2566 Female, age 72, unknown 33.6
2111 Female, age 85, right hemisphere 33.4
Nucleus accumbens
nTPM: 38.7
1856 Female, age 91, right hemisphere 40.1
2824 Male, age 61, right hemisphere 40.0
2286 Male, age 75, left hemisphere 39.1
1783 Male, age 74, unknown 38.7
2698 Female, age 72, unknown 38.7
1806 Female, age 85, left hemisphere 37.9
2732 Male, age 80, right hemisphere 37.4
2391 Female, age 94, left hemisphere 37.3
Nucleus basalis of Meynert
nTPM: 36.6
2821 Male, age 75, both hemispheres 38.3
2393 Male, age 80, right hemisphere 37.3
2484 Female, age 94, left hemisphere 37.2
2569 Male, age 61, both hemispheres 33.5
Nucleus of the diagonal band
nTPM: 42.5
1812 Female, age 91, both hemispheres 44.5
2775 Male, age 80, right hemisphere 44.4
2195 Female, age 85, both hemispheres 43.1
2029 Male, age 61, right hemisphere 42.6
1979 Male, age 74, unknown 37.8
Olfactory tubercle
nTPM: 41.5
2487 Female, age 94, left hemisphere 42.6
1998 Female, age 91, both hemispheres 42.3
1846 Male, age 80, right hemisphere 41.7
2856 Male, age 75, right hemisphere 39.2
Putamen
nTPM: 36.7
1838 Male, age 80, right hemisphere 38.4
1937 Female, age 91, right hemisphere 37.9
2466 Female, age 79, unknown 37.4
2482 Female, age 94, left hemisphere 37.3
1829 Male, age 74, unknown 36.8
2489 Female, age 72, unknown 34.6
2647 Male, age 75, left hemisphere 34.4
Septal nuclei
nTPM: 40.3
1960 Male, age 74, unknown 45.3
2031 Female, age 72, unknown 43.6
2009 Female, age 91, both hemispheres 42.1
2629 Female, age 94, right hemisphere 42.0
2059 Female, age 85, both hemispheres 37.3
2199 Male, age 80, right hemisphere 36.6
2394 Male, age 61, left hemisphere 35.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.0
Samples: 246

Max nTPM: 69.0
Min nTPM: 18.9
Std nTPM: 8.0
Median nTPM: 33.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 69.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 60.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 57.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 56.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 55.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 55.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 55.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 55.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 50.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 50.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 49.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.1
Samples: 246

Max nTPM: 67.7
Min nTPM: 14.3
Std nTPM: 10.4
Median nTPM: 42.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 67.7
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 67.4
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 64.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 63.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 63.3
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 62.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 62.3
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 61.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 61.3
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 61.3
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 61.0
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Brain - Putamen (basal ganglia)
Average nTPM: 32.4
Samples: 205

Max nTPM: 55.6
Min nTPM: 15.0
Std nTPM: 7.7
Median nTPM: 31.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 55.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 54.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 51.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 51.0
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 50.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 50.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 50.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 49.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 49.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 48.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 48.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 36.8
FF:10164-103B2 76 years, female 36.8
Globus pallidus
Scaled Tags Per Million: 44.7
FF:10175-103C4 60 years, female 59.9
FF:10161-103A8 76 years, female 29.4
Nucleus accumbens
Scaled Tags Per Million: 37.6
FF:10037-101F1 23-56 years, mixed 37.6
Putamen
Scaled Tags Per Million: 61.1
FF:10176-103C5 60 years, female 61.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Caudate
nTPM: 20.7
Samples: 4

Max nTPM: 24.6
Min nTPM: 15.2
Sample A Female 24.6
Sample B Female 21.8
Sample C Male 21.3
Sample D Male 15.2
Putamen
nTPM: 15.0
Samples: 4

Max nTPM: 19.1
Min nTPM: 13.3
Sample A Female 14.1
Sample B Female 13.3
Sample C Male 19.1
Sample D Male 13.6
Septum
nTPM: 22.7
Samples: 4

Max nTPM: 29.7
Min nTPM: 16.9
Sample A Female 29.7
Sample B Female 16.9
Sample C Male 26.3
Sample D Male 17.9
Ventral pallidum
nTPM: 19.0
Samples: 4

Max nTPM: 25.9
Min nTPM: 14.9
Sample A Female 25.9
Sample B Female 14.9
Sample C Male 17.9
Sample D Male 17.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 20.8
Samples: 4

Max nTPM: 22.1
Min nTPM: 17.8
Sample A Male 17.8
Sample B Male 22.1
Sample C Female 21.6
Sample D Female 21.8
Septum
nTPM: 24.3
Samples: 4

Max nTPM: 30.4
Min nTPM: 19.3
Sample A Male 30.4
Sample B Male 19.3
Sample C Female 25.8
Sample D Female 21.8
Ventral forebrain
nTPM: 21.1
Samples: 4

Max nTPM: 21.9
Min nTPM: 19.3
Sample A Male 21.9
Sample B Male 21.4
Sample C Female 21.6
Sample D Female 19.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
68158074 Antisense, RP_041116_02_G03, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.5
68158074 Antisense, RP_041116_02_G03, Mouse strain C57BL/6J (56 days, male) 0.5

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