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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:114.3 nTPM
HPA:114.3 nTPM
GTEx:48.9 nTPM
FANTOM5:1315.4 Scaled Tags Per Million
Pig:46.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 114.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 114.3
2048 Male, age 55, midline 197.1
1981 Female, age 72, midline 181.0
2816 Male, age 47, midline 82.1
2194 Female, age 79, both hemispheres 67.3
2565 Male, age 75, midline 43.8
Cervical spinal cord, dorsal horn
nTPM: 92.0
2173 Female, age 72, unknown 158.4
2296 Male, age 66, both hemispheres 122.4
2721 Male, age 90, both hemispheres 91.9
2069 Male, age 47, both hemispheres 85.1
1877 Male, age 55, unknown 79.6
2297 Male, age 75, both hemispheres 14.7
Cervical spinal cord, ventral horn
nTPM: 77.6
2098 Female, age 72, unknown 258.3
2809 Male, age 90, both hemispheres 58.1
2068 Male, age 55, unknown 57.5
2295 Male, age 66, both hemispheres 43.1
2820 Female, age 79, both hemispheres 30.2
2480 Male, age 75, both hemispheres 18.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 48.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 48.9
Samples: 159

Max nTPM: 295.3
Min nTPM: 5.2
Std nTPM: 39.4
Median nTPM: 39.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 295.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 221.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 202.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 190.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 137.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 134.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 129.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 121.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 118.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 115.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 113.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 107.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 94.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 94.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 89.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 87.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 85.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 85.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 81.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 80.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 79.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 76.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 76.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 73.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 72.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 71.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 68.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 67.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 66.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 65.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 64.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 64.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 64.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 63.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 58.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 57.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 56.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 56.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 56.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 56.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 56.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 55.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 55.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 55.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 55.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 55.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 54.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 53.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 52.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 51.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 51.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 51.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 50.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 50.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 50.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 48.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 47.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 47.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 46.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 46.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 45.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 45.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 44.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 44.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 44.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 44.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 43.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 43.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 43.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 42.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 42.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 42.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 41.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 41.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 41.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 41.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 40.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 40.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 40.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 39.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 39.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 39.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 39.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 38.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 37.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 37.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 37.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 37.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 37.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 36.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 34.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 34.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 34.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 34.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 33.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 32.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 32.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 31.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 31.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 30.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 29.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 29.5
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 29.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 29.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 28.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 28.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 28.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 28.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 28.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 27.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 27.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 27.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 27.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 27.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 27.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 27.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 26.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 26.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 26.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 25.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 25.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 25.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 25.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 25.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 24.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 23.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 23.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 23.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 23.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 22.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 22.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 22.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 21.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 21.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 21.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 20.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 20.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 19.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 18.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 18.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 18.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 17.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 17.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 17.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 16.7
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 16.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 16.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 16.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 15.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 14.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 14.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 14.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 13.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 12.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 12.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 11.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 11.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 10.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 5.2
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1315.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1315.4
FF:10159-103A6 76 years, female 1821.6
FF:10181-103D1 60 years, female 809.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 43.4
Samples: 4

Max nTPM: 61.1
Min nTPM: 33.1
Sample A Female 33.1
Sample B Female 41.3
Sample C Male 61.1
Sample D Male 38.1
Ventral spinal cord
nTPM: 46.7
Samples: 4

Max nTPM: 52.2
Min nTPM: 39.2
Sample A Female 43.3
Sample B Female 39.2
Sample C Male 52.2
Sample D Male 51.9

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