MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.9 nTPM
HPA:12.9 nTPM
GTEx:15.0 nTPM
FANTOM5:118.7 Scaled Tags Per Million
Pig:81.2 nTPM
Mouse:38.5 nTPM
Allen mouse:14.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.3
1870 Female, age 42, unknown 11.4
1833 Male, age 53, unknown 10.9
1827 Male, age 72, unknown 10.6
2019 Male, age 18, unknown 8.9
2411 Female, age 72, unknown 8.8
2219 Male, age 76, both hemispheres 8.3
1830 Male, age 51, unknown 8.2
2828 Female, age 72, unknown 7.2
2666 Male, age 74, left hemisphere 5.4
2586 Male, age 75, left hemisphere 3.1
Dorsal raphe nucleus
nTPM: 9.9
2298 Female, age 72, unknown 15.3
2016 Female, age 72, unknown 9.1
1828 Male, age 53, unknown 8.9
2750 Male, age 76, both hemispheres 8.3
2047 Male, age 72, unknown 8.0
Inferior colliculus
nTPM: 11.3
2097 Female, age 72, unknown 12.6
2849 Male, age 72, unknown 12.5
1848 Female, age 42, unknown 11.2
1890 Male, age 53, unknown 9.0
Median raphe nucleus
nTPM: 10.3
2220 Male, age 76, midline 10.3
Pedunculopontine tegmental nucleus
nTPM: 10.8
1921 Female, age 85, both hemispheres 12.1
2334 Male, age 80, both hemispheres 11.0
2338 Male, age 61, both hemispheres 9.2
Periaquaductal grey, anterior
nTPM: 7.0
1795 Male, age 51, unknown 7.9
1947 Male, age 18, unknown 7.1
2502 Female, age 75, unknown 5.9
Periaquaductal grey, dorsal
nTPM: 10.6
2850 Male, age 76, both hemispheres 12.7
1831 Male, age 72, unknown 10.6
1840 Male, age 53, unknown 10.1
2464 Female, age 72, unknown 9.2
Periaquaductal grey, lateral
nTPM: 12.9
2272 Male, age 74, both hemispheres 13.9
2140 Male, age 76, both hemispheres 12.8
2053 Male, age 18, unknown 12.1
Pretectal area
nTPM: 11.2
2273 Male, age 74, both hemispheres 14.6
2224 Female, age 72, unknown 14.3
2667 Female, age 75, unknown 12.1
1817 Female, age 42, unknown 12.0
2825 Male, age 18, unknown 11.2
2316 Male, age 76, right hemisphere 11.0
1944 Female, age 72, unknown 10.7
1816 Male, age 51, unknown 10.4
1815 Male, age 53, unknown 10.1
2007 Male, age 72, unknown 9.2
2407 Male, age 75, both hemispheres 7.2
Red nucleus
nTPM: 9.1
2503 Female, age 72, unknown 13.0
1821 Female, age 72, unknown 12.6
2725 Female, age 75, unknown 10.0
1954 Female, age 42, unknown 9.8
1865 Male, age 51, unknown 9.6
1904 Male, age 53, unknown 9.0
2227 Male, age 72, unknown 8.8
2785 Male, age 18, unknown 8.3
2769 Male, age 72, unknown 7.6
2823 Male, age 76, right hemisphere 7.6
2584 Male, age 75, left hemisphere 6.7
2588 Male, age 74, left hemisphere 6.2
Substantia nigra
nTPM: 9.8
2409 Female, age 72, unknown 14.1
2590 Female, age 75, unknown 12.4
2241 Male, age 72, unknown 11.6
1889 Female, age 72, unknown 9.6
1941 Male, age 53, unknown 9.5
1851 Male, age 51, unknown 9.2
1916 Female, age 42, unknown 9.1
2699 Male, age 18, unknown 8.9
2583 Male, age 75, right hemisphere 7.8
2665 Male, age 74, both hemispheres 5.9
Superior colliculus
nTPM: 8.6
1895 Male, age 76, right hemisphere 10.7
2587 Male, age 74, left hemisphere 10.7
1796 Male, age 53, unknown 10.1
2261 Male, age 18, unknown 9.7
1839 Male, age 51, unknown 9.2
1913 Female, age 42, unknown 9.1
2087 Female, age 72, unknown 8.6
1995 Male, age 72, unknown 8.4
2668 Female, age 75, unknown 5.7
2664 Male, age 75, both hemispheres 4.2
Ventral tegmental area
nTPM: 9.9
1915 Female, age 42, unknown 10.6
2218 Male, age 76, both hemispheres 10.6
2223 Female, age 72, unknown 10.6
2021 Male, age 53, unknown 10.1
2410 Female, age 72, unknown 8.8
1942 Male, age 51, unknown 8.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.0
Samples: 139

Max nTPM: 26.4
Min nTPM: 6.9
Std nTPM: 2.8
Median nTPM: 14.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 26.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 24.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 22.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 22.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 20.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 20.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 20.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 20.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 19.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 19.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 19.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 118.7
FF:10158-103A5 76 years, female 118.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.2
Pig sample Sample description nTPM
Midbrain
nTPM: 81.3
Samples: 4

Max nTPM: 85.4
Min nTPM: 75.6
Sample A Female 80.1
Sample B Female 75.6
Sample C Male 85.4
Sample D Male 83.9
Periaqueductal gray
nTPM: 74.6
Samples: 3

Max nTPM: 78.4
Min nTPM: 68.8
Sample B Female 68.8
Sample C Male 78.4
Sample D Male 76.6
Substantia nigra
nTPM: 70.4
Samples: 4

Max nTPM: 75.2
Min nTPM: 64.3
Sample A Female 72.9
Sample B Female 69.1
Sample C Male 75.2
Sample D Male 64.3
Superior colliculi
nTPM: 78.2
Samples: 4

Max nTPM: 86.7
Min nTPM: 68.1
Sample A Female 75.9
Sample B Female 68.1
Sample C Male 81.9
Sample D Male 86.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.5
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.0
Sample A Male 37.9
Sample B Male 41.0
Sample C Female 40.2
Sample D Female 35.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.2
68498325 Antisense, RP_050113_01_G04, Mouse strain C57BL/6J (56 days, male) 14.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.