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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:29.4 nTPM
HPA:29.4 nTPM
GTEx:38.3 nTPM
FANTOM5:90.7 Scaled Tags Per Million
Pig:49.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 29.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 21.6
2048 Male, age 55, midline 28.6
1981 Female, age 72, midline 23.9
2816 Male, age 47, midline 21.6
2194 Female, age 79, both hemispheres 21.3
2565 Male, age 75, midline 12.5
Cervical spinal cord, dorsal horn
nTPM: 29.4
2296 Male, age 66, both hemispheres 49.4
2173 Female, age 72, unknown 36.2
1877 Male, age 55, unknown 32.7
2069 Male, age 47, both hemispheres 27.4
2297 Male, age 75, both hemispheres 16.8
2721 Male, age 90, both hemispheres 13.8
Cervical spinal cord, ventral horn
nTPM: 25.4
2068 Male, age 55, unknown 31.8
2820 Female, age 79, both hemispheres 27.7
2098 Female, age 72, unknown 26.0
2809 Male, age 90, both hemispheres 23.7
2480 Male, age 75, both hemispheres 23.1
2295 Male, age 66, both hemispheres 20.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 38.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 38.3
Samples: 159

Max nTPM: 92.5
Min nTPM: 6.6
Std nTPM: 15.4
Median nTPM: 37.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 92.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 79.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 70.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 67.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 66.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 65.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 65.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 64.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 63.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 61.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 61.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 61.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 61.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 61.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 60.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 60.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 60.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 59.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 59.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 59.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 58.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 57.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 56.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 56.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 56.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 55.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 55.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 54.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 53.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 52.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 51.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 51.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 51.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 50.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 50.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 50.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 49.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 49.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 49.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 49.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 48.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 48.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 48.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 46.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 46.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 46.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 46.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 45.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 45.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 45.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 44.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 44.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 44.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 44.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 43.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 43.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 43.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 43.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 43.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 43.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 43.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 43.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 43.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 42.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 41.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 40.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 40.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 40.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 40.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 39.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 39.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 39.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 39.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 38.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 38.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 38.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 37.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 37.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 37.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 37.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 37.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 37.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 37.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 36.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 36.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 35.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 35.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 35.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 35.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 34.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 34.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 34.3
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 34.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 33.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 33.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 32.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 32.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 32.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 31.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 31.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 30.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 30.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 30.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 30.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 29.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 29.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 28.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 28.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 28.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 28.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 27.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 27.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 27.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 26.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 26.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 26.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 26.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 26.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 25.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 25.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 25.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 25.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 24.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 24.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 24.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 24.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 23.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 23.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 23.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 23.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 23.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 23.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 23.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 23.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 23.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 22.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 22.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 22.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 21.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 21.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 21.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 20.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 20.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 19.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 19.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 18.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 18.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 18.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 18.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 16.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 15.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 15.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 14.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 14.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 13.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 12.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 11.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 6.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 6.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 90.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 90.7
FF:10181-103D1 60 years, female 103.9
FF:10159-103A6 76 years, female 77.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 49.3
Samples: 4

Max nTPM: 61.8
Min nTPM: 37.3
Sample A Female 43.9
Sample B Female 54.1
Sample C Male 61.8
Sample D Male 37.3
Ventral spinal cord
nTPM: 44.6
Samples: 4

Max nTPM: 54.1
Min nTPM: 39.3
Sample A Female 54.1
Sample B Female 41.0
Sample C Male 39.3
Sample D Male 44.1

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