MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:70.9 nTPM
HPA:70.9 nTPM
GTEx:51.8 nTPM
FANTOM5:105.1 Scaled Tags Per Million
Pig:21.8 nTPM
Mouse:11.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.0
2666 Male, age 74, left hemisphere 74.7
1830 Male, age 51, unknown 74.1
2586 Male, age 75, left hemisphere 72.4
1833 Male, age 53, unknown 71.6
2411 Female, age 72, unknown 65.6
2828 Female, age 72, unknown 64.3
1870 Female, age 42, unknown 62.3
2019 Male, age 18, unknown 56.1
1827 Male, age 72, unknown 54.9
2219 Male, age 76, both hemispheres 54.1
Dorsal raphe nucleus
nTPM: 55.5
2750 Male, age 76, both hemispheres 63.9
2016 Female, age 72, unknown 59.3
2047 Male, age 72, unknown 56.2
1828 Male, age 53, unknown 54.4
2298 Female, age 72, unknown 43.6
Inferior colliculus
nTPM: 50.0
2849 Male, age 72, unknown 57.4
1848 Female, age 42, unknown 51.9
1890 Male, age 53, unknown 49.9
2097 Female, age 72, unknown 40.6
Median raphe nucleus
nTPM: 61.9
2220 Male, age 76, midline 61.9
Pedunculopontine tegmental nucleus
nTPM: 57.7
2338 Male, age 61, both hemispheres 61.9
2334 Male, age 80, both hemispheres 59.6
1921 Female, age 85, both hemispheres 51.5
Periaquaductal grey, anterior
nTPM: 51.5
2502 Female, age 75, unknown 57.5
1947 Male, age 18, unknown 50.8
1795 Male, age 51, unknown 46.3
Periaquaductal grey, dorsal
nTPM: 52.0
2464 Female, age 72, unknown 56.1
2850 Male, age 76, both hemispheres 55.3
1831 Male, age 72, unknown 51.5
1840 Male, age 53, unknown 45.1
Periaquaductal grey, lateral
nTPM: 51.8
2053 Male, age 18, unknown 55.0
2140 Male, age 76, both hemispheres 52.9
2272 Male, age 74, both hemispheres 47.6
Pretectal area
nTPM: 50.6
2407 Male, age 75, both hemispheres 64.6
1815 Male, age 53, unknown 62.8
2316 Male, age 76, right hemisphere 59.1
2825 Male, age 18, unknown 58.4
1817 Female, age 42, unknown 50.8
2007 Male, age 72, unknown 45.6
2224 Female, age 72, unknown 45.6
2667 Female, age 75, unknown 44.1
2273 Male, age 74, both hemispheres 43.8
1816 Male, age 51, unknown 41.1
1944 Female, age 72, unknown 41.0
Red nucleus
nTPM: 70.9
1865 Male, age 51, unknown 82.4
2588 Male, age 74, left hemisphere 81.3
1904 Male, age 53, unknown 78.8
2503 Female, age 72, unknown 76.1
2769 Male, age 72, unknown 69.1
1821 Female, age 72, unknown 68.8
2227 Male, age 72, unknown 67.0
2584 Male, age 75, left hemisphere 66.1
2785 Male, age 18, unknown 66.1
1954 Female, age 42, unknown 65.8
2823 Male, age 76, right hemisphere 64.8
2725 Female, age 75, unknown 64.4
Substantia nigra
nTPM: 62.0
2699 Male, age 18, unknown 79.3
2665 Male, age 74, both hemispheres 69.9
2590 Female, age 75, unknown 66.7
2409 Female, age 72, unknown 63.5
2583 Male, age 75, right hemisphere 62.6
1851 Male, age 51, unknown 62.3
2241 Male, age 72, unknown 57.2
1916 Female, age 42, unknown 53.1
1941 Male, age 53, unknown 53.1
1889 Female, age 72, unknown 52.4
Superior colliculus
nTPM: 58.8
1995 Male, age 72, unknown 72.3
1913 Female, age 42, unknown 70.1
2664 Male, age 75, both hemispheres 65.3
2587 Male, age 74, left hemisphere 63.3
1839 Male, age 51, unknown 61.0
2668 Female, age 75, unknown 59.0
1895 Male, age 76, right hemisphere 54.2
1796 Male, age 53, unknown 51.6
2087 Female, age 72, unknown 46.3
2261 Male, age 18, unknown 44.9
Ventral tegmental area
nTPM: 58.8
2410 Female, age 72, unknown 64.5
2223 Female, age 72, unknown 60.6
1915 Female, age 42, unknown 57.1
2218 Male, age 76, both hemispheres 57.0
1942 Male, age 51, unknown 56.9
2021 Male, age 53, unknown 56.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.8
Samples: 139

Max nTPM: 130.1
Min nTPM: 19.9
Std nTPM: 21.8
Median nTPM: 46.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 130.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 118.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 110.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 102.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 97.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 95.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 95.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 93.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 91.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 90.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 88.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.1
FF:10158-103A5 76 years, female 105.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.8
Pig sample Sample description nTPM
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 21.5
Min nTPM: 12.2
Sample A Female 21.5
Sample B Female 19.2
Sample C Male 14.4
Sample D Male 12.2
Periaqueductal gray
nTPM: 15.8
Samples: 3

Max nTPM: 16.4
Min nTPM: 15.4
Sample B Female 16.4
Sample C Male 15.4
Sample D Male 15.5
Substantia nigra
nTPM: 21.8
Samples: 4

Max nTPM: 27.2
Min nTPM: 17.7
Sample A Female 19.9
Sample B Female 17.7
Sample C Male 22.5
Sample D Male 27.2
Superior colliculi
nTPM: 16.1
Samples: 4

Max nTPM: 18.2
Min nTPM: 14.1
Sample A Female 16.2
Sample B Female 14.1
Sample C Male 16.0
Sample D Male 18.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.6
Samples: 4

Max nTPM: 12.3
Min nTPM: 11.0
Sample A Male 11.9
Sample B Male 12.3
Sample C Female 11.0
Sample D Female 11.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69672701 Antisense, RP_050428_04_C12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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