BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:3.3 nTPM
HPA:3.3 nTPM
GTEx:2.4 nTPM
FANTOM5:10.9 Scaled Tags Per Million
Pig:2.0 nTPM
Mouse:2.3 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA037010Antibody HPA037011
Glial cells Not detectedLow
Neuronal cells Not detectedLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.9
1857 Female, age 85, left hemisphere 3.1
2288 Male, age 75, left hemisphere 3.1
2846 Female, age 79, unknown 3.0
1781 Male, age 74, unknown 2.9
1854 Male, age 80, left hemisphere 2.9
2289 Male, age 61, right hemisphere 2.8
2481 Female, age 94, left hemisphere 2.8
2290 Female, age 72, unknown 2.4
Claustrum
nTPM: 2.5
2491 Male, age 75, both hemispheres 3.7
2392 Female, age 94, both hemispheres 3.3
2196 Female, age 79, unknown 3.1
2292 Female, age 85, both hemispheres 2.4
1956 Male, age 74, unknown 2.3
2568 Male, age 61, both hemispheres 2.3
2284 Female, age 91, both hemispheres 2.2
2645 Female, age 72, unknown 1.8
2198 Male, age 80, both hemispheres 1.7
Globus pallidus, externus
nTPM: 2.6
2646 Male, age 61, right hemisphere 2.8
1996 Male, age 80, right hemisphere 2.7
2395 Male, age 75, both hemispheres 2.7
2772 Female, age 79, unknown 2.5
2567 Female, age 72, unknown 2.4
Globus pallidus, internus
nTPM: 3.1
2778 Female, age 91, both hemispheres 3.8
2111 Female, age 85, right hemisphere 3.4
2287 Male, age 75, right hemisphere 3.4
2566 Female, age 72, unknown 3.2
1818 Male, age 74, unknown 3.1
2037 Male, age 80, right hemisphere 2.7
2483 Female, age 94, right hemisphere 2.0
Nucleus accumbens
nTPM: 2.7
1856 Female, age 91, right hemisphere 3.8
2286 Male, age 75, left hemisphere 3.0
2391 Female, age 94, left hemisphere 2.8
1783 Male, age 74, unknown 2.7
1806 Female, age 85, left hemisphere 2.6
2698 Female, age 72, unknown 2.5
2732 Male, age 80, right hemisphere 2.2
2824 Male, age 61, right hemisphere 1.8
Nucleus basalis of Meynert
nTPM: 2.3
2393 Male, age 80, right hemisphere 2.9
2484 Female, age 94, left hemisphere 2.7
2821 Male, age 75, both hemispheres 2.3
2569 Male, age 61, both hemispheres 1.3
Nucleus of the diagonal band
nTPM: 2.8
1812 Female, age 91, both hemispheres 3.4
1979 Male, age 74, unknown 3.1
2029 Male, age 61, right hemisphere 3.0
2195 Female, age 85, both hemispheres 2.7
2775 Male, age 80, right hemisphere 1.8
Olfactory tubercle
nTPM: 3.3
2856 Male, age 75, right hemisphere 3.7
1998 Female, age 91, both hemispheres 3.4
2487 Female, age 94, left hemisphere 3.2
1846 Male, age 80, right hemisphere 2.8
Putamen
nTPM: 2.6
1937 Female, age 91, right hemisphere 3.3
2466 Female, age 79, unknown 3.0
1829 Male, age 74, unknown 2.8
1838 Male, age 80, right hemisphere 2.6
2482 Female, age 94, left hemisphere 2.2
2647 Male, age 75, left hemisphere 2.2
2489 Female, age 72, unknown 2.1
Septal nuclei
nTPM: 2.6
2394 Male, age 61, left hemisphere 3.3
2629 Female, age 94, right hemisphere 3.1
2031 Female, age 72, unknown 2.9
1960 Male, age 74, unknown 2.5
2009 Female, age 91, both hemispheres 2.3
2199 Male, age 80, right hemisphere 2.3
2059 Female, age 85, both hemispheres 1.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.3
Samples: 246

Max nTPM: 5.4
Min nTPM: 0.9
Std nTPM: 0.5
Median nTPM: 2.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 5.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 4.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 4.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 4.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 3.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 3.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 3.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 3.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 3.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 3.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 3.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.3
Samples: 246

Max nTPM: 4.3
Min nTPM: 0.7
Std nTPM: 0.5
Median nTPM: 2.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 4.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 4.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 3.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 3.8
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 3.8
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 3.8
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 3.8
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 3.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 3.6
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 3.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 3.4
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Brain - Putamen (basal ganglia)
Average nTPM: 2.4
Samples: 205

Max nTPM: 4.7
Min nTPM: 0.9
Std nTPM: 0.6
Median nTPM: 2.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 4.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 4.5
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 4.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 3.7
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 3.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 3.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 3.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 3.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 3.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 3.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.7
FF:10164-103B2 76 years, female 8.7
Globus pallidus
Scaled Tags Per Million: 10.9
FF:10175-103C4 60 years, female 11.0
FF:10161-103A8 76 years, female 10.8
Nucleus accumbens
Scaled Tags Per Million: 10.5
FF:10037-101F1 23-56 years, mixed 10.5
Putamen
Scaled Tags Per Million: 6.7
FF:10176-103C5 60 years, female 6.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.0
Pig sample Sample description nTPM
Caudate
nTPM: 1.8
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 1.9
Sample C Male 1.7
Sample D Male 1.9
Putamen
nTPM: 2.0
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.7
Sample A Female 2.3
Sample B Female 1.9
Sample C Male 1.7
Sample D Male 1.9
Septum
nTPM: 2.0
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.9
Sample A Female 2.1
Sample B Female 2.1
Sample C Male 1.9
Sample D Male 2.0
Ventral pallidum
nTPM: 2.0
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 2.1
Sample C Male 2.0
Sample D Male 2.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.2
Samples: 4

Max nTPM: 2.9
Min nTPM: 1.1
Sample A Male 2.9
Sample B Male 2.6
Sample C Female 2.2
Sample D Female 1.1
Septum
nTPM: 1.8
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.3
Sample A Male 1.9
Sample B Male 1.3
Sample C Female 1.9
Sample D Female 2.2
Ventral forebrain
nTPM: 2.3
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.5
Sample A Male 2.5
Sample B Male 2.5
Sample C Female 1.5
Sample D Female 2.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69352828 Antisense, RP_050412_01_B12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69352828 Antisense, RP_050412_01_B12, Mouse strain C57BL/6J (56 days, male) 0.0

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