MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:12.3 nTPM
HPA:12.3 nTPM
GTEx:10.7 nTPM
FANTOM5:61.5 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:11.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
2219 Male, age 76, both hemispheres 13.0
1830 Male, age 51, unknown 11.6
1833 Male, age 53, unknown 11.3
1827 Male, age 72, unknown 11.1
1870 Female, age 42, unknown 10.9
2019 Male, age 18, unknown 10.8
2586 Male, age 75, left hemisphere 10.8
2666 Male, age 74, left hemisphere 10.7
2828 Female, age 72, unknown 10.2
2411 Female, age 72, unknown 9.4
Dorsal raphe nucleus
nTPM: 9.2
2016 Female, age 72, unknown 10.2
1828 Male, age 53, unknown 9.8
2047 Male, age 72, unknown 9.4
2750 Male, age 76, both hemispheres 9.3
2298 Female, age 72, unknown 7.5
Inferior colliculus
nTPM: 11.7
2849 Male, age 72, unknown 13.1
1890 Male, age 53, unknown 12.2
1848 Female, age 42, unknown 11.7
2097 Female, age 72, unknown 9.9
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Pedunculopontine tegmental nucleus
nTPM: 12.0
2338 Male, age 61, both hemispheres 14.4
1921 Female, age 85, both hemispheres 10.8
2334 Male, age 80, both hemispheres 10.7
Periaquaductal grey, anterior
nTPM: 9.6
2502 Female, age 75, unknown 10.4
1947 Male, age 18, unknown 9.6
1795 Male, age 51, unknown 8.8
Periaquaductal grey, dorsal
nTPM: 10.4
1831 Male, age 72, unknown 11.7
2850 Male, age 76, both hemispheres 11.2
1840 Male, age 53, unknown 9.4
2464 Female, age 72, unknown 9.4
Periaquaductal grey, lateral
nTPM: 9.9
2140 Male, age 76, both hemispheres 10.6
2053 Male, age 18, unknown 10.2
2272 Male, age 74, both hemispheres 8.9
Pretectal area
nTPM: 11.1
2407 Male, age 75, both hemispheres 13.2
1817 Female, age 42, unknown 12.1
2007 Male, age 72, unknown 11.7
1815 Male, age 53, unknown 11.6
2667 Female, age 75, unknown 11.5
1816 Male, age 51, unknown 11.4
1944 Female, age 72, unknown 11.0
2825 Male, age 18, unknown 10.4
2316 Male, age 76, right hemisphere 10.2
2273 Male, age 74, both hemispheres 9.4
2224 Female, age 72, unknown 9.0
Red nucleus
nTPM: 12.3
2503 Female, age 72, unknown 13.7
1865 Male, age 51, unknown 13.5
1954 Female, age 42, unknown 12.8
1904 Male, age 53, unknown 12.4
1821 Female, age 72, unknown 12.2
2584 Male, age 75, left hemisphere 12.1
2785 Male, age 18, unknown 12.0
2823 Male, age 76, right hemisphere 12.0
2588 Male, age 74, left hemisphere 11.7
2725 Female, age 75, unknown 11.7
2227 Male, age 72, unknown 11.5
2769 Male, age 72, unknown 11.4
Substantia nigra
nTPM: 10.1
2583 Male, age 75, right hemisphere 11.5
2699 Male, age 18, unknown 11.4
2665 Male, age 74, both hemispheres 11.3
2590 Female, age 75, unknown 11.1
1889 Female, age 72, unknown 10.8
1941 Male, age 53, unknown 10.0
1916 Female, age 42, unknown 9.3
2409 Female, age 72, unknown 9.1
1851 Male, age 51, unknown 8.8
2241 Male, age 72, unknown 7.8
Superior colliculus
nTPM: 11.0
1895 Male, age 76, right hemisphere 12.6
1913 Female, age 42, unknown 11.8
2587 Male, age 74, left hemisphere 11.8
2664 Male, age 75, both hemispheres 11.7
1995 Male, age 72, unknown 11.4
1839 Male, age 51, unknown 11.2
2087 Female, age 72, unknown 10.3
2261 Male, age 18, unknown 10.2
1796 Male, age 53, unknown 9.7
2668 Female, age 75, unknown 9.2
Ventral tegmental area
nTPM: 10.0
2223 Female, age 72, unknown 11.5
2218 Male, age 76, both hemispheres 10.5
2021 Male, age 53, unknown 10.1
1942 Male, age 51, unknown 9.9
2410 Female, age 72, unknown 9.2
1915 Female, age 42, unknown 9.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.7
Samples: 139

Max nTPM: 17.0
Min nTPM: 4.6
Std nTPM: 2.4
Median nTPM: 10.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 17.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 16.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 15.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 15.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 15.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 15.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 14.4
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 14.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 14.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 14.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.5
FF:10158-103A5 76 years, female 61.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.2
Pig sample Sample description nTPM
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 14.6
Min nTPM: 7.8
Sample A Female 8.2
Sample B Female 7.8
Sample C Male 14.6
Sample D Male 10.3
Periaqueductal gray
nTPM: 8.3
Samples: 3

Max nTPM: 9.2
Min nTPM: 7.7
Sample B Female 7.7
Sample C Male 9.2
Sample D Male 8.0
Substantia nigra
nTPM: 9.0
Samples: 4

Max nTPM: 10.3
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 8.2
Sample C Male 10.3
Sample D Male 9.6
Superior colliculi
nTPM: 10.2
Samples: 4

Max nTPM: 12.8
Min nTPM: 7.6
Sample A Female 8.8
Sample B Female 7.6
Sample C Male 12.8
Sample D Male 11.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.9
Samples: 4

Max nTPM: 13.2
Min nTPM: 9.4
Sample A Male 9.4
Sample B Male 12.9
Sample C Female 13.2
Sample D Female 12.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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