BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:13.8 nTPM
HPA:13.8 nTPM
GTEx:12.5 nTPM
FANTOM5:11.2 Scaled Tags Per Million
Pig:4.4 nTPM
Mouse:6.2 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA057810
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.1
2288 Male, age 75, left hemisphere 12.5
2289 Male, age 61, right hemisphere 12.3
1781 Male, age 74, unknown 11.5
2481 Female, age 94, left hemisphere 11.1
2846 Female, age 79, unknown 10.6
2290 Female, age 72, unknown 10.5
1854 Male, age 80, left hemisphere 10.2
1857 Female, age 85, left hemisphere 9.7
Claustrum
nTPM: 12.3
2292 Female, age 85, both hemispheres 13.8
2645 Female, age 72, unknown 13.3
2284 Female, age 91, both hemispheres 13.2
2568 Male, age 61, both hemispheres 13.2
2491 Male, age 75, both hemispheres 12.1
2198 Male, age 80, both hemispheres 11.8
2392 Female, age 94, both hemispheres 11.3
1956 Male, age 74, unknown 11.2
2196 Female, age 79, unknown 11.0
Globus pallidus, externus
nTPM: 13.7
2567 Female, age 72, unknown 16.5
2646 Male, age 61, right hemisphere 13.7
1996 Male, age 80, right hemisphere 12.9
2772 Female, age 79, unknown 12.8
2395 Male, age 75, both hemispheres 12.6
Globus pallidus, internus
nTPM: 13.8
2111 Female, age 85, right hemisphere 15.9
2566 Female, age 72, unknown 15.8
2778 Female, age 91, both hemispheres 13.7
1818 Male, age 74, unknown 13.4
2037 Male, age 80, right hemisphere 12.7
2483 Female, age 94, right hemisphere 12.7
2287 Male, age 75, right hemisphere 12.3
Nucleus accumbens
nTPM: 11.4
2732 Male, age 80, right hemisphere 12.7
2824 Male, age 61, right hemisphere 12.6
2286 Male, age 75, left hemisphere 11.8
2698 Female, age 72, unknown 11.2
1806 Female, age 85, left hemisphere 10.9
1856 Female, age 91, right hemisphere 10.9
1783 Male, age 74, unknown 10.7
2391 Female, age 94, left hemisphere 10.4
Nucleus basalis of Meynert
nTPM: 12.3
2569 Male, age 61, both hemispheres 14.1
2484 Female, age 94, left hemisphere 12.3
2393 Male, age 80, right hemisphere 11.5
2821 Male, age 75, both hemispheres 11.4
Nucleus of the diagonal band
nTPM: 11.6
2029 Male, age 61, right hemisphere 12.7
1979 Male, age 74, unknown 12.2
2195 Female, age 85, both hemispheres 11.4
2775 Male, age 80, right hemisphere 11.3
1812 Female, age 91, both hemispheres 10.4
Olfactory tubercle
nTPM: 11.6
2487 Female, age 94, left hemisphere 12.7
2856 Male, age 75, right hemisphere 11.7
1846 Male, age 80, right hemisphere 10.9
1998 Female, age 91, both hemispheres 10.9
Putamen
nTPM: 11.9
2647 Male, age 75, left hemisphere 13.6
2489 Female, age 72, unknown 12.7
1937 Female, age 91, right hemisphere 12.6
2466 Female, age 79, unknown 12.0
2482 Female, age 94, left hemisphere 11.1
1829 Male, age 74, unknown 11.0
1838 Male, age 80, right hemisphere 10.7
Septal nuclei
nTPM: 11.8
2059 Female, age 85, both hemispheres 12.8
2394 Male, age 61, left hemisphere 12.6
2199 Male, age 80, right hemisphere 12.1
1960 Male, age 74, unknown 11.7
2031 Female, age 72, unknown 11.3
2009 Female, age 91, both hemispheres 11.0
2629 Female, age 94, right hemisphere 10.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.5
Samples: 246

Max nTPM: 19.0
Min nTPM: 5.4
Std nTPM: 2.2
Median nTPM: 11.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 19.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 18.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 17.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 16.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 16.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 16.4
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 16.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 15.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 15.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 15.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 15.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.5
Samples: 246

Max nTPM: 24.2
Min nTPM: 5.5
Std nTPM: 2.7
Median nTPM: 11.0
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 24.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 21.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 21.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 21.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 19.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 18.6
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 18.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 17.7
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 17.4
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 16.4
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 16.2
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Brain - Putamen (basal ganglia)
Average nTPM: 12.5
Samples: 205

Max nTPM: 21.6
Min nTPM: 6.6
Std nTPM: 2.4
Median nTPM: 12.4
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 21.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 19.8
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 19.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 19.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 18.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 18.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 18.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 17.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 17.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 16.8
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 16.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.7
FF:10164-103B2 76 years, female 7.7
Globus pallidus
Scaled Tags Per Million: 10.5
FF:10161-103A8 76 years, female 14.8
FF:10175-103C4 60 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 11.2
FF:10037-101F1 23-56 years, mixed 11.2
Putamen
Scaled Tags Per Million: 5.9
FF:10176-103C5 60 years, female 5.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.4
Pig sample Sample description nTPM
Caudate
nTPM: 3.7
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 3.7
Sample C Male 3.9
Sample D Male 3.9
Putamen
nTPM: 3.8
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.2
Sample A Female 4.1
Sample B Female 3.2
Sample C Male 3.3
Sample D Male 4.6
Septum
nTPM: 4.4
Samples: 4

Max nTPM: 4.6
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 4.2
Sample C Male 4.6
Sample D Male 4.4
Ventral pallidum
nTPM: 4.3
Samples: 4

Max nTPM: 5.5
Min nTPM: 3.5
Sample A Female 3.5
Sample B Female 3.8
Sample C Male 5.5
Sample D Male 4.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 4.6
Samples: 4

Max nTPM: 4.8
Min nTPM: 4.3
Sample A Male 4.8
Sample B Male 4.5
Sample C Female 4.7
Sample D Female 4.3
Septum
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.8
Sample A Male 5.0
Sample B Male 4.8
Sample C Female 6.2
Sample D Female 5.8
Ventral forebrain
nTPM: 6.2
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.0
Sample A Male 7.2
Sample B Male 6.5
Sample C Female 5.0
Sample D Female 6.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68161456 Antisense, RP_041122_01_C09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68161456 Antisense, RP_041122_01_C09, Mouse strain C57BL/6J (56 days, male) 0.0

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