BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA:17.0 nTPM
GTEx:7.2 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:7.0 nTPM
Mouse:9.8 nTPM
Allen mouse:2.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 17.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.3
2289 Male, age 61, right hemisphere 14.4
2481 Female, age 94, left hemisphere 9.2
2288 Male, age 75, left hemisphere 7.4
1854 Male, age 80, left hemisphere 7.3
1781 Male, age 74, unknown 6.0
2290 Female, age 72, unknown 5.5
2846 Female, age 79, unknown 5.5
1857 Female, age 85, left hemisphere 2.9
Claustrum
nTPM: 10.0
2292 Female, age 85, both hemispheres 13.0
2568 Male, age 61, both hemispheres 10.5
1956 Male, age 74, unknown 10.3
2196 Female, age 79, unknown 10.1
2284 Female, age 91, both hemispheres 9.8
2392 Female, age 94, both hemispheres 9.6
2198 Male, age 80, both hemispheres 9.0
2645 Female, age 72, unknown 8.9
2491 Male, age 75, both hemispheres 8.7
Globus pallidus, externus
nTPM: 17.0
2567 Female, age 72, unknown 27.1
2646 Male, age 61, right hemisphere 21.9
1996 Male, age 80, right hemisphere 13.2
2772 Female, age 79, unknown 12.2
2395 Male, age 75, both hemispheres 10.8
Globus pallidus, internus
nTPM: 16.0
2566 Female, age 72, unknown 21.1
2111 Female, age 85, right hemisphere 21.0
2778 Female, age 91, both hemispheres 18.6
2037 Male, age 80, right hemisphere 17.0
1818 Male, age 74, unknown 15.9
2483 Female, age 94, right hemisphere 9.9
2287 Male, age 75, right hemisphere 8.4
Nucleus accumbens
nTPM: 7.4
2391 Female, age 94, left hemisphere 13.6
2732 Male, age 80, right hemisphere 13.5
2698 Female, age 72, unknown 6.5
1806 Female, age 85, left hemisphere 6.4
2824 Male, age 61, right hemisphere 5.7
1783 Male, age 74, unknown 5.5
2286 Male, age 75, left hemisphere 5.5
1856 Female, age 91, right hemisphere 2.3
Nucleus basalis of Meynert
nTPM: 10.5
2569 Male, age 61, both hemispheres 18.0
2484 Female, age 94, left hemisphere 8.5
2821 Male, age 75, both hemispheres 7.8
2393 Male, age 80, right hemisphere 7.6
Nucleus of the diagonal band
nTPM: 4.9
2029 Male, age 61, right hemisphere 6.2
1979 Male, age 74, unknown 5.9
1812 Female, age 91, both hemispheres 4.6
2195 Female, age 85, both hemispheres 4.5
2775 Male, age 80, right hemisphere 3.6
Olfactory tubercle
nTPM: 4.8
2856 Male, age 75, right hemisphere 5.3
1998 Female, age 91, both hemispheres 4.9
2487 Female, age 94, left hemisphere 4.8
1846 Male, age 80, right hemisphere 4.0
Putamen
nTPM: 9.2
2489 Female, age 72, unknown 14.5
2647 Male, age 75, left hemisphere 10.7
1829 Male, age 74, unknown 9.7
2482 Female, age 94, left hemisphere 8.8
2466 Female, age 79, unknown 7.8
1937 Female, age 91, right hemisphere 6.7
1838 Male, age 80, right hemisphere 6.3
Septal nuclei
nTPM: 6.0
2199 Male, age 80, right hemisphere 12.0
2394 Male, age 61, left hemisphere 9.1
2009 Female, age 91, both hemispheres 6.1
2059 Female, age 85, both hemispheres 5.4
2629 Female, age 94, right hemisphere 4.4
1960 Male, age 74, unknown 3.4
2031 Female, age 72, unknown 1.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.9
Samples: 246

Max nTPM: 14.6
Min nTPM: 2.4
Std nTPM: 1.8
Median nTPM: 6.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 14.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 12.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 11.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 11.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 11.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 10.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 10.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 10.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 10.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 10.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 10.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.8
Samples: 246

Max nTPM: 10.6
Min nTPM: 2.1
Std nTPM: 1.6
Median nTPM: 5.4
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 10.6
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 10.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 10.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 10.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 9.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 9.8
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 9.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 9.5
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 9.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 9.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 9.4
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Brain - Putamen (basal ganglia)
Average nTPM: 7.2
Samples: 205

Max nTPM: 13.4
Min nTPM: 3.0
Std nTPM: 1.9
Median nTPM: 7.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 13.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 12.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 11.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 11.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 11.5
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 11.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 11.0
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 11.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 11.0
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 10.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 10.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.5
FF:10164-103B2 76 years, female 13.5
Globus pallidus
Scaled Tags Per Million: 23.2
FF:10161-103A8 76 years, female 24.3
FF:10175-103C4 60 years, female 22.1
Nucleus accumbens
Scaled Tags Per Million: 14.6
FF:10037-101F1 23-56 years, mixed 14.6
Putamen
Scaled Tags Per Million: 7.5
FF:10176-103C5 60 years, female 7.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.0
Pig sample Sample description nTPM
Caudate
nTPM: 5.3
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 5.5
Sample C Male 5.9
Sample D Male 5.0
Putamen
nTPM: 6.9
Samples: 4

Max nTPM: 8.7
Min nTPM: 4.5
Sample A Female 8.7
Sample B Female 4.5
Sample C Male 6.2
Sample D Male 8.1
Septum
nTPM: 6.1
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.8
Sample A Female 5.7
Sample B Female 4.8
Sample C Male 6.8
Sample D Male 7.1
Ventral pallidum
nTPM: 7.1
Samples: 4

Max nTPM: 9.1
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 6.3
Sample C Male 9.1
Sample D Male 8.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 9.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 9.3
Samples: 4

Max nTPM: 10.0
Min nTPM: 8.6
Sample A Male 9.1
Sample B Male 8.6
Sample C Female 10.0
Sample D Female 9.6
Septum
nTPM: 9.1
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.4
Sample A Male 9.3
Sample B Male 8.4
Sample C Female 8.8
Sample D Female 9.8
Ventral forebrain
nTPM: 9.8
Samples: 4

Max nTPM: 10.6
Min nTPM: 9.2
Sample A Male 10.0
Sample B Male 9.4
Sample C Female 10.6
Sample D Female 9.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
275689 Antisense, RP_040617_01_B11, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 2.0
275689 Antisense, RP_040617_01_B11, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

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