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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:95.9 nTPM
HPA:95.9 nTPM
GTEx:129.7 nTPM
FANTOM5:204.5 Scaled Tags Per Million
Pig:67.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 95.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 92.0
2048 Male, age 55, midline 101.2
1981 Female, age 72, midline 100.3
2816 Male, age 47, midline 90.4
2194 Female, age 79, both hemispheres 86.2
2565 Male, age 75, midline 81.8
Cervical spinal cord, dorsal horn
nTPM: 95.9
2173 Female, age 72, unknown 112.1
2296 Male, age 66, both hemispheres 110.1
2069 Male, age 47, both hemispheres 103.5
1877 Male, age 55, unknown 87.5
2721 Male, age 90, both hemispheres 82.1
2297 Male, age 75, both hemispheres 80.1
Cervical spinal cord, ventral horn
nTPM: 94.9
2098 Female, age 72, unknown 108.8
2068 Male, age 55, unknown 97.9
2809 Male, age 90, both hemispheres 96.2
2480 Male, age 75, both hemispheres 93.4
2295 Male, age 66, both hemispheres 91.2
2820 Female, age 79, both hemispheres 81.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 129.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 129.7
Samples: 159

Max nTPM: 245.4
Min nTPM: 76.4
Std nTPM: 25.7
Median nTPM: 126.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 245.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 220.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 204.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 188.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 183.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 177.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 169.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 168.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 167.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 166.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 165.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 163.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 163.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 163.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 163.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 162.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 161.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 161.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 158.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 158.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 156.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 155.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 153.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 153.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 152.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 152.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 152.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 152.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 151.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 150.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 150.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 149.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 148.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 148.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 147.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 147.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 147.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 146.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 146.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 146.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 144.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 144.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 144.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 144.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 144.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 143.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 143.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 141.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 140.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 140.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 140.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 139.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 139.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 139.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 137.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 136.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 136.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 136.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 136.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 136.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 134.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 132.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 132.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 132.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 132.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 132.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 130.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 130.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 130.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 129.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 129.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 129.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 129.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 127.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 127.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 127.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 127.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 127.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 127.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 126.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 126.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 126.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 126.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 125.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 124.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 124.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 124.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 124.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 124.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 124.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 124.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 123.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 123.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 122.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 122.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 122.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 122.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 121.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 121.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 120.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 120.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 117.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 117.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 116.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 116.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 116.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 115.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 115.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 114.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 114.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 114.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 113.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 113.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 113.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 113.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 112.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 112.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 111.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 111.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 111.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 110.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 110.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 110.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 110.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 109.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 109.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 109.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 109.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 108.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 107.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 107.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 107.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 107.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 107.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 107.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 105.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 105.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 104.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 103.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 102.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 102.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 101.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 100.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 100.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 99.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 98.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 98.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 97.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 95.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 94.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 94.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 93.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 91.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 90.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 89.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 86.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 84.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 78.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 76.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 204.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 204.5
FF:10181-103D1 60 years, female 209.2
FF:10159-103A6 76 years, female 199.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 67.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 67.4
Samples: 4

Max nTPM: 104.3
Min nTPM: 48.4
Sample A Female 54.1
Sample B Female 62.9
Sample C Male 104.3
Sample D Male 48.4
Ventral spinal cord
nTPM: 59.1
Samples: 4

Max nTPM: 77.1
Min nTPM: 40.0
Sample A Female 63.7
Sample B Female 55.7
Sample C Male 77.1
Sample D Male 40.0

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