MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:107.0 nTPM
HPA:107.0 nTPM
GTEx:78.1 nTPM
FANTOM5:371.2 Scaled Tags Per Million
Pig:119.2 nTPM
Mouse:235.4 nTPM
Allen mouse:17.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 107.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.9
2411 Female, age 72, unknown 97.5
2019 Male, age 18, unknown 91.9
1870 Female, age 42, unknown 90.8
2666 Male, age 74, left hemisphere 90.5
1827 Male, age 72, unknown 84.2
1833 Male, age 53, unknown 81.7
2828 Female, age 72, unknown 80.9
1830 Male, age 51, unknown 80.6
2219 Male, age 76, both hemispheres 67.5
2586 Male, age 75, left hemisphere 63.3
Dorsal raphe nucleus
nTPM: 93.2
2298 Female, age 72, unknown 122.3
2047 Male, age 72, unknown 90.1
1828 Male, age 53, unknown 89.7
2016 Female, age 72, unknown 82.8
2750 Male, age 76, both hemispheres 81.3
Inferior colliculus
nTPM: 86.1
2097 Female, age 72, unknown 99.6
1848 Female, age 42, unknown 83.2
1890 Male, age 53, unknown 83.2
2849 Male, age 72, unknown 78.3
Median raphe nucleus
nTPM: 104.4
2220 Male, age 76, midline 104.4
Pedunculopontine tegmental nucleus
nTPM: 95.6
2334 Male, age 80, both hemispheres 104.0
2338 Male, age 61, both hemispheres 96.2
1921 Female, age 85, both hemispheres 86.6
Periaquaductal grey, anterior
nTPM: 91.5
1947 Male, age 18, unknown 96.2
2502 Female, age 75, unknown 92.7
1795 Male, age 51, unknown 85.7
Periaquaductal grey, dorsal
nTPM: 88.3
2850 Male, age 76, both hemispheres 108.2
1840 Male, age 53, unknown 88.1
2464 Female, age 72, unknown 79.0
1831 Male, age 72, unknown 78.2
Periaquaductal grey, lateral
nTPM: 107.0
2272 Male, age 74, both hemispheres 132.7
2140 Male, age 76, both hemispheres 104.4
2053 Male, age 18, unknown 83.9
Pretectal area
nTPM: 94.5
2273 Male, age 74, both hemispheres 145.8
2224 Female, age 72, unknown 102.9
2007 Male, age 72, unknown 94.2
1944 Female, age 72, unknown 92.5
1817 Female, age 42, unknown 91.5
2667 Female, age 75, unknown 90.0
1816 Male, age 51, unknown 89.5
2407 Male, age 75, both hemispheres 86.9
1815 Male, age 53, unknown 86.7
2825 Male, age 18, unknown 85.6
2316 Male, age 76, right hemisphere 74.2
Red nucleus
nTPM: 80.0
2725 Female, age 75, unknown 93.8
1821 Female, age 72, unknown 87.7
1954 Female, age 42, unknown 87.4
2785 Male, age 18, unknown 85.7
1904 Male, age 53, unknown 83.5
2503 Female, age 72, unknown 83.1
1865 Male, age 51, unknown 82.9
2227 Male, age 72, unknown 79.3
2769 Male, age 72, unknown 78.6
2584 Male, age 75, left hemisphere 74.2
2823 Male, age 76, right hemisphere 67.1
2588 Male, age 74, left hemisphere 56.7
Substantia nigra
nTPM: 82.9
1916 Female, age 42, unknown 98.1
2241 Male, age 72, unknown 94.9
1889 Female, age 72, unknown 93.1
1851 Male, age 51, unknown 89.0
2409 Female, age 72, unknown 84.9
1941 Male, age 53, unknown 83.0
2699 Male, age 18, unknown 75.2
2590 Female, age 75, unknown 74.7
2583 Male, age 75, right hemisphere 72.9
2665 Male, age 74, both hemispheres 63.4
Superior colliculus
nTPM: 82.4
2587 Male, age 74, left hemisphere 107.7
2261 Male, age 18, unknown 89.7
2087 Female, age 72, unknown 89.4
1796 Male, age 53, unknown 86.0
1913 Female, age 42, unknown 81.5
1995 Male, age 72, unknown 81.2
1839 Male, age 51, unknown 78.4
2668 Female, age 75, unknown 75.8
1895 Male, age 76, right hemisphere 70.7
2664 Male, age 75, both hemispheres 63.6
Ventral tegmental area
nTPM: 86.2
2410 Female, age 72, unknown 99.1
1915 Female, age 42, unknown 91.1
1942 Male, age 51, unknown 85.0
2021 Male, age 53, unknown 81.5
2223 Female, age 72, unknown 80.7
2218 Male, age 76, both hemispheres 79.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.1
Samples: 139

Max nTPM: 357.7
Min nTPM: 24.5
Std nTPM: 51.7
Median nTPM: 61.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 357.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 270.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 263.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 239.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 226.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 216.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 191.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 180.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 176.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 162.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 161.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 371.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 371.2
FF:10158-103A5 76 years, female 371.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 119.2
Pig sample Sample description nTPM
Midbrain
nTPM: 107.4
Samples: 4

Max nTPM: 114.6
Min nTPM: 94.7
Sample A Female 109.1
Sample B Female 94.7
Sample C Male 111.3
Sample D Male 114.6
Periaqueductal gray
nTPM: 111.3
Samples: 3

Max nTPM: 124.8
Min nTPM: 104.5
Sample B Female 104.5
Sample C Male 104.6
Sample D Male 124.8
Substantia nigra
nTPM: 100.4
Samples: 4

Max nTPM: 127.3
Min nTPM: 81.7
Sample A Female 127.3
Sample B Female 88.4
Sample C Male 104.2
Sample D Male 81.7
Superior colliculi
nTPM: 119.2
Samples: 4

Max nTPM: 128.6
Min nTPM: 111.2
Sample A Female 128.6
Sample B Female 125.6
Sample C Male 111.3
Sample D Male 111.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 235.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 235.4
Samples: 4

Max nTPM: 268.8
Min nTPM: 192.1
Sample A Male 192.1
Sample B Male 218.8
Sample C Female 268.8
Sample D Female 262.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.6
69735138 Antisense, RP_050503_02_B08, Mouse strain C57BL/6J (56 days, male) 17.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.