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GPM6B
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:533.4 nTPM
HPA:533.4 nTPM
GTEx:742.2 nTPM
FANTOM5:1441.6 Scaled Tags Per Million
Pig:752.6 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 533.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 508.7
1981 Female, age 72, midline 605.8
2048 Male, age 55, midline 590.6
2816 Male, age 47, midline 497.0
2194 Female, age 79, both hemispheres 438.1
2565 Male, age 75, midline 411.8
Cervical spinal cord, dorsal horn
nTPM: 533.4
2296 Male, age 66, both hemispheres 847.8
2173 Female, age 72, unknown 650.5
2069 Male, age 47, both hemispheres 560.5
1877 Male, age 55, unknown 469.0
2721 Male, age 90, both hemispheres 340.6
2297 Male, age 75, both hemispheres 331.7
Cervical spinal cord, ventral horn
nTPM: 492.7
2098 Female, age 72, unknown 659.4
2068 Male, age 55, unknown 498.7
2480 Male, age 75, both hemispheres 473.8
2809 Male, age 90, both hemispheres 461.9
2295 Male, age 66, both hemispheres 448.0
2820 Female, age 79, both hemispheres 414.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 742.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 742.2
Samples: 159

Max nTPM: 1306.9
Min nTPM: 231.4
Std nTPM: 223.2
Median nTPM: 742.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1306.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1236.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1224.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 1216.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1215.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1139.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1129.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1091.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1081.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1076.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1067.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1057.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1047.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1034.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1025.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1019.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1019.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1007.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1000.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 999.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 990.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 979.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 974.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 969.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 965.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 960.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 955.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 946.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 946.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 941.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 938.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 936.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 936.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 936.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 927.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 927.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 926.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 916.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 902.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 899.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 894.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 892.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 888.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 883.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 881.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 880.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 866.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 864.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 860.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 858.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 853.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 852.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 851.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 851.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 848.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 839.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 838.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 835.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 833.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 810.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 808.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 807.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 803.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 802.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 799.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 798.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 796.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 787.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 780.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 779.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 777.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 775.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 772.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 765.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 755.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 751.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 749.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 744.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 743.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 742.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 738.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 737.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 733.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 726.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 725.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 724.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 723.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 722.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 716.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 714.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 710.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 710.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 710.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 702.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 701.5
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 696.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 693.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 693.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 693.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 682.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 681.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 677.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 659.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 658.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 658.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 648.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 646.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 642.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 640.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 636.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 633.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 632.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 631.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 617.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 609.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 607.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 606.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 598.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 595.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 591.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 588.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 586.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 585.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 573.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 572.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 566.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 565.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 558.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 554.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 554.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 545.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 539.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 508.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 507.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 502.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 499.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 485.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 485.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 481.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 467.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 465.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 457.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 443.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 384.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 378.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 378.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 377.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 376.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 368.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 366.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 357.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 355.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 345.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 305.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 303.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 303.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 280.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 275.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 231.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1441.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1441.6
FF:10181-103D1 60 years, female 1526.9
FF:10159-103A6 76 years, female 1356.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 752.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 611.9
Samples: 4

Max nTPM: 719.1
Min nTPM: 523.3
Sample A Female 567.7
Sample B Female 719.1
Sample C Male 523.3
Sample D Male 637.4
Ventral spinal cord
nTPM: 752.6
Samples: 4

Max nTPM: 917.9
Min nTPM: 592.8
Sample A Female 775.2
Sample B Female 724.3
Sample C Male 592.8
Sample D Male 917.9

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