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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:246.5 nTPM
GTEx:246.5 nTPM
FANTOM5:148.9 Scaled Tags Per Million
Pig:2.9 nTPM
Mouse:128.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 246.5
GTEx sample id Sample description nTPM
Retina
Average nTPM: 246.5
Samples: 105

Max nTPM: 1134.1
Min nTPM: 36.8
Std nTPM: 175.6
Median nTPM:
308_1 70 years, female 1134.1
490_1 67 years, female 835.9
491_1 89 years, female 761.0
384_1 83 years, male 589.4
41_1 94 years, female 572.6
119_1 70 years, female 566.3
307_1 66 years, female 563.1
313_1 79 years, female 539.8
314_1 67 years, male 525.0
447_1 81 years, male 474.3
4_1 88 years, female 471.4
89_1 63 years, male 460.1
42_1 85 years, male 452.9
117_1 61 years, male 419.7
315_1 62 years, female 407.0
145_1 84 years, male 396.3
137_1 83 years, male 384.9
311_1 78 years, male 375.8
317_1 60 years, male 357.2
139_1 64 years, female 356.0
501_1 88 years, male 351.6
293_1 68 years, female 347.1
348_1 84 years, male 341.6
173_1 67 years, male 340.3
526_1 61 years, male 337.0
120_1 70 years, female 323.0
288_1 66 years, female 315.2
351_1 91 years, male 298.0
254_1 77 years, female 286.9
17_1 71 years, male 281.0
295_1 61 years, female 276.2
324_1 76 years, male 274.5
452_1 88 years, female 266.5
495_1 57 years, female 263.3
2_1 77 years, female 262.3
321_1 62 years, female 254.5
347_1 72 years, male 250.7
375_1 74 years, female 250.7
237_1 82 years, male 247.3
322_1 76 years, male 239.3
291_1 76 years, male 236.5
320_1 89 years, female 235.9
43_1 64 years, female 235.7
389_1 86 years, female 227.6
415_1 77 years, female 226.3
126_1 63 years, male 223.0
414_1 84 years, female 222.1
99_1 64 years, male 219.2
319_1 81 years, male 213.8
264_1 73 years, female 212.8
81_1 67 years, male 211.9
480_1 63 years, male 208.7
350_1 84 years, female 208.3
353_1 82 years, female 197.0
6_1 73 years, female 193.6
218_1 71 years, female 190.9
396_1 62 years, male 185.9
35_1 74 years, female 185.5
189_1 76 years, male 183.5
406_1 79 years, male 180.6
153_1 70 years, female 176.9
109_1 81 years, female 166.1
379_1 60 years, male 166.1
466_1 57 years, female 162.7
149_1 88 years, male 157.7
172_1 72 years, female 156.8
18_1 88 years, male 156.2
142_1 61 years, female 156.2
394_1 75 years, female 150.8
349_1 83 years, male 146.9
32_1 67 years, male 146.0
413_1 59 years, female 144.6
115_1 83 years, male 143.7
518_1 75 years, female 143.4
386_1 76 years, male 137.3
354_1 81 years, female 136.3
499_1 55 years, female 135.7
356_1 87 years, female 132.0
265_1 87 years, male 130.4
376_1 75 years, female 129.3
162_1 79 years, female 128.3
251_1 78 years, male 125.1
243_1 75 years, male 122.7
503_1 68 years, male 122.4
468_1 89 years, male 118.9
506_1 65 years, male 115.0
316_1 62 years, male 106.5
217_1 76 years, male 105.6
9_1 66 years, female 104.7
405_1 91 years, male 100.9
377_1 82 years, female 100.4
318_1 68 years, male 95.2
517_1 88 years, male 94.5
246_1 77 years, male 93.2
266_1 85 years, male 91.7
163_1 78 years, male 85.5
286_1 68 years, female 80.9
404_1 82 years, female 79.1
292_1 71 years, male 68.2
355_1 70 years, female 66.8
177_1 74 years, male 65.6
425_1 59 years, female 56.0
335_1 73 years, female 52.7
229_1 69 years, female 45.1
352_1 62 years, male 36.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 148.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 148.9
FF:10030-101E3 24-65 years, mixed 148.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2.9
Pig sample Sample description nTPM
Retina
nTPM: 2.9
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 3.1
Sample C Male 3.9
Sample D Male 2.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 128.3
Mouse sample Sample description nTPM
Retina
nTPM: 128.3
Samples: 4

Max nTPM: 156.1
Min nTPM: 110.9
Sample A Male 156.1
Sample B Male 115.4
Sample C Female 130.9
Sample D Female 110.9

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