BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:60.1 nTPM
HPA:60.1 nTPM
GTEx:92.9 nTPM
FANTOM5:191.9 Scaled Tags Per Million
Pig:41.7 nTPM
Mouse:35.3 nTPM
Allen mouse:4.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028053Antibody HPA029615Antibody HPA029616
Glial cells Not detectedNot detectedNot detected
Neuronal cells LowNot detectedLow




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 60.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 51.8
1857 Female, age 85, left hemisphere 69.5
1854 Male, age 80, left hemisphere 65.1
2846 Female, age 79, unknown 55.7
1781 Male, age 74, unknown 50.6
2290 Female, age 72, unknown 50.6
2481 Female, age 94, left hemisphere 42.0
2289 Male, age 61, right hemisphere 41.3
2288 Male, age 75, left hemisphere 39.9
Claustrum
nTPM: 35.8
2196 Female, age 79, unknown 42.3
2392 Female, age 94, both hemispheres 37.5
2284 Female, age 91, both hemispheres 37.0
2491 Male, age 75, both hemispheres 35.8
2568 Male, age 61, both hemispheres 35.2
2198 Male, age 80, both hemispheres 35.1
2292 Female, age 85, both hemispheres 33.9
1956 Male, age 74, unknown 33.0
2645 Female, age 72, unknown 32.5
Globus pallidus, externus
nTPM: 37.3
2395 Male, age 75, both hemispheres 39.3
2567 Female, age 72, unknown 37.4
2772 Female, age 79, unknown 37.2
1996 Male, age 80, right hemisphere 36.5
2646 Male, age 61, right hemisphere 36.3
Globus pallidus, internus
nTPM: 37.2
2287 Male, age 75, right hemisphere 41.3
2483 Female, age 94, right hemisphere 41.0
2566 Female, age 72, unknown 37.6
1818 Male, age 74, unknown 36.9
2037 Male, age 80, right hemisphere 35.9
2778 Female, age 91, both hemispheres 34.8
2111 Female, age 85, right hemisphere 33.2
Nucleus accumbens
nTPM: 60.1
1856 Female, age 91, right hemisphere 86.4
2824 Male, age 61, right hemisphere 73.5
1806 Female, age 85, left hemisphere 72.1
1783 Male, age 74, unknown 66.1
2698 Female, age 72, unknown 58.8
2732 Male, age 80, right hemisphere 43.2
2286 Male, age 75, left hemisphere 41.4
2391 Female, age 94, left hemisphere 39.4
Nucleus basalis of Meynert
nTPM: 46.0
2393 Male, age 80, right hemisphere 62.5
2484 Female, age 94, left hemisphere 44.4
2569 Male, age 61, both hemispheres 39.8
2821 Male, age 75, both hemispheres 37.4
Nucleus of the diagonal band
nTPM: 41.3
1812 Female, age 91, both hemispheres 45.9
2775 Male, age 80, right hemisphere 43.6
2195 Female, age 85, both hemispheres 39.7
2029 Male, age 61, right hemisphere 39.4
1979 Male, age 74, unknown 37.9
Olfactory tubercle
nTPM: 39.2
1846 Male, age 80, right hemisphere 43.3
2487 Female, age 94, left hemisphere 38.5
1998 Female, age 91, both hemispheres 38.3
2856 Male, age 75, right hemisphere 36.7
Putamen
nTPM: 54.2
1838 Male, age 80, right hemisphere 83.8
1937 Female, age 91, right hemisphere 64.9
2466 Female, age 79, unknown 53.7
1829 Male, age 74, unknown 52.3
2482 Female, age 94, left hemisphere 44.0
2489 Female, age 72, unknown 41.5
2647 Male, age 75, left hemisphere 39.2
Septal nuclei
nTPM: 38.1
2031 Female, age 72, unknown 40.6
2009 Female, age 91, both hemispheres 39.9
2394 Male, age 61, left hemisphere 38.4
2629 Female, age 94, right hemisphere 38.4
1960 Male, age 74, unknown 37.9
2059 Female, age 85, both hemispheres 35.9
2199 Male, age 80, right hemisphere 35.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 92.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 50.8
Samples: 246

Max nTPM: 147.8
Min nTPM: 14.7
Std nTPM: 24.4
Median nTPM: 45.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 147.8
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 141.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 140.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 129.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 122.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 116.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 116.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 112.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 109.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 108.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 107.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 92.9
Samples: 246

Max nTPM: 244.0
Min nTPM: 16.1
Std nTPM: 44.6
Median nTPM: 90.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 244.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 226.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 223.8
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 223.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 207.8
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 202.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 199.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 194.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 191.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 182.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 181.7
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Brain - Putamen (basal ganglia)
Average nTPM: 62.3
Samples: 205

Max nTPM: 194.6
Min nTPM: 22.1
Std nTPM: 33.5
Median nTPM: 50.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 194.6
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 166.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 156.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 155.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 152.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 148.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 144.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 135.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 130.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 128.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 126.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 191.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 146.4
FF:10164-103B2 76 years, female 146.4
Globus pallidus
Scaled Tags Per Million: 34.7
FF:10175-103C4 60 years, female 43.4
FF:10161-103A8 76 years, female 26.0
Nucleus accumbens
Scaled Tags Per Million: 62.3
FF:10037-101F1 23-56 years, mixed 62.3
Putamen
Scaled Tags Per Million: 191.9
FF:10176-103C5 60 years, female 191.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.7
Pig sample Sample description nTPM
Caudate
nTPM: 36.9
Samples: 4

Max nTPM: 45.0
Min nTPM: 29.4
Sample A Female 29.4
Sample B Female 39.9
Sample C Male 45.0
Sample D Male 33.2
Putamen
nTPM: 41.8
Samples: 4

Max nTPM: 54.5
Min nTPM: 34.5
Sample A Female 34.5
Sample B Female 37.0
Sample C Male 54.5
Sample D Male 41.0
Septum
nTPM: 25.2
Samples: 4

Max nTPM: 30.7
Min nTPM: 14.9
Sample A Female 30.7
Sample B Female 28.2
Sample C Male 26.8
Sample D Male 14.9
Ventral pallidum
nTPM: 29.4
Samples: 4

Max nTPM: 34.4
Min nTPM: 24.9
Sample A Female 28.7
Sample B Female 34.4
Sample C Male 29.4
Sample D Male 24.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 35.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 35.3
Samples: 4

Max nTPM: 42.5
Min nTPM: 29.2
Sample A Male 35.5
Sample B Male 42.5
Sample C Female 34.1
Sample D Female 29.2
Septum
nTPM: 32.3
Samples: 4

Max nTPM: 35.2
Min nTPM: 29.9
Sample A Male 29.9
Sample B Male 32.7
Sample C Female 35.2
Sample D Female 31.4
Ventral forebrain
nTPM: 34.4
Samples: 4

Max nTPM: 45.3
Min nTPM: 30.2
Sample A Male 30.2
Sample B Male 31.2
Sample C Female 45.3
Sample D Female 30.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.1
75651202 Antisense, RP_060518_01_C10, Mouse strain C57BL/6J (56 days, male) 3.3
79588292 Antisense, RP_071204_02_E03, Mouse strain C57BL/6J (56 days, male) 3.1
68666481 Antisense, RP_050126_02_D02, Mouse strain C57BL/6J (56 days, male) 2.7
Pallidum
Expression energy: 4.0
79588292 Antisense, RP_071204_02_E03, Mouse strain C57BL/6J (56 days, male) 4.1
75651202 Antisense, RP_060518_01_C10, Mouse strain C57BL/6J (56 days, male) 4.1
68666481 Antisense, RP_050126_02_D02, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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