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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Low
Photoreceptor cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:226.0 nTPM
GTEx:226.0 nTPM
FANTOM5:22.0 Scaled Tags Per Million
Mouse:47.6 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA057499
Photoreceptor cells Not detected
Limiting membrane Not detected
Outer plexiform layer Low
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 226.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 226.0
Samples: 105

Max nTPM: 437.4
Min nTPM: 102.4
Std nTPM: 56.5
Median nTPM:
237_1 82 years, male 437.4
218_1 71 years, female 386.4
172_1 72 years, female 386.2
35_1 74 years, female 342.8
6_1 73 years, female 339.5
375_1 74 years, female 317.9
389_1 86 years, female 307.6
126_1 63 years, male 306.8
217_1 76 years, male 303.8
319_1 81 years, male 303.2
386_1 76 years, male 302.5
189_1 76 years, male 286.8
229_1 69 years, female 284.0
347_1 72 years, male 278.2
354_1 81 years, female 276.5
307_1 66 years, female 273.5
379_1 60 years, male 273.1
117_1 61 years, male 271.2
9_1 66 years, female 269.2
352_1 62 years, male 267.5
115_1 83 years, male 264.2
405_1 91 years, male 263.3
246_1 77 years, male 260.2
335_1 73 years, female 258.6
468_1 89 years, male 256.9
526_1 61 years, male 256.6
415_1 77 years, female 251.9
43_1 64 years, female 251.0
32_1 67 years, male 249.0
321_1 62 years, female 249.0
177_1 74 years, male 245.2
355_1 70 years, female 244.4
265_1 87 years, male 244.0
425_1 59 years, female 243.5
316_1 62 years, male 243.0
266_1 85 years, male 241.3
406_1 79 years, male 240.3
145_1 84 years, male 239.9
447_1 81 years, male 237.6
153_1 70 years, female 236.9
480_1 63 years, male 234.5
376_1 75 years, female 234.0
490_1 67 years, female 233.8
243_1 75 years, male 232.5
503_1 68 years, male 231.6
291_1 76 years, male 231.0
162_1 79 years, female 230.9
317_1 60 years, male 229.5
495_1 57 years, female 228.6
377_1 82 years, female 228.2
384_1 83 years, male 226.9
414_1 84 years, female 226.8
499_1 55 years, female 226.8
42_1 85 years, male 225.7
2_1 77 years, female 225.3
466_1 57 years, female 225.1
324_1 76 years, male 223.8
394_1 75 years, female 219.4
251_1 78 years, male 213.8
142_1 61 years, female 212.6
137_1 83 years, male 208.6
404_1 82 years, female 208.1
4_1 88 years, female 207.3
517_1 88 years, male 207.0
356_1 87 years, female 206.9
348_1 84 years, male 206.4
163_1 78 years, male 206.0
292_1 71 years, male 205.0
318_1 68 years, male 202.2
173_1 67 years, male 200.6
315_1 62 years, female 200.5
349_1 83 years, male 200.5
353_1 82 years, female 198.0
288_1 66 years, female 197.8
254_1 77 years, female 195.5
81_1 67 years, male 194.0
350_1 84 years, female 194.0
99_1 64 years, male 193.9
396_1 62 years, male 193.4
351_1 91 years, male 192.4
518_1 75 years, female 191.2
286_1 68 years, female 188.4
322_1 76 years, male 186.8
18_1 88 years, male 186.0
311_1 78 years, male 183.8
293_1 68 years, female 182.0
320_1 89 years, female 181.7
120_1 70 years, female 179.5
119_1 70 years, female 178.8
313_1 79 years, female 177.9
149_1 88 years, male 174.2
264_1 73 years, female 161.6
506_1 65 years, male 160.5
308_1 70 years, female 156.8
314_1 67 years, male 150.2
109_1 81 years, female 147.8
139_1 64 years, female 147.3
413_1 59 years, female 144.8
17_1 71 years, male 144.0
491_1 89 years, female 136.8
295_1 61 years, female 132.9
89_1 63 years, male 130.6
452_1 88 years, female 130.6
41_1 94 years, female 126.3
501_1 88 years, male 102.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 22.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 22.0
FF:10030-101E3 24-65 years, mixed 22.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.6
Mouse sample Sample description nTPM
Retina
nTPM: 47.6
Samples: 4

Max nTPM: 52.5
Min nTPM: 42.4
Sample A Male 52.5
Sample B Male 46.3
Sample C Female 42.4
Sample D Female 49.1

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by the Knut & Alice Wallenberg Foundation.