MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:61.9 nTPM
HPA:61.9 nTPM
GTEx:42.5 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Pig:33.2 nTPM
Mouse:45.3 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 61.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.9
2219 Male, age 76, both hemispheres 52.0
2586 Male, age 75, left hemisphere 47.9
2828 Female, age 72, unknown 40.1
1833 Male, age 53, unknown 40.0
1827 Male, age 72, unknown 39.7
1830 Male, age 51, unknown 37.1
2411 Female, age 72, unknown 35.0
1870 Female, age 42, unknown 34.7
2666 Male, age 74, left hemisphere 33.4
2019 Male, age 18, unknown 29.4
Dorsal raphe nucleus
nTPM: 36.6
2016 Female, age 72, unknown 42.4
2047 Male, age 72, unknown 37.8
2298 Female, age 72, unknown 37.6
1828 Male, age 53, unknown 35.8
2750 Male, age 76, both hemispheres 29.4
Inferior colliculus
nTPM: 44.1
1848 Female, age 42, unknown 55.9
2849 Male, age 72, unknown 50.3
1890 Male, age 53, unknown 35.6
2097 Female, age 72, unknown 34.7
Median raphe nucleus
nTPM: 32.9
2220 Male, age 76, midline 32.9
Pedunculopontine tegmental nucleus
nTPM: 33.6
1921 Female, age 85, both hemispheres 36.0
2334 Male, age 80, both hemispheres 32.7
2338 Male, age 61, both hemispheres 32.1
Periaquaductal grey, anterior
nTPM: 34.3
2502 Female, age 75, unknown 38.5
1795 Male, age 51, unknown 32.8
1947 Male, age 18, unknown 31.6
Periaquaductal grey, dorsal
nTPM: 44.0
1840 Male, age 53, unknown 59.5
1831 Male, age 72, unknown 41.3
2464 Female, age 72, unknown 39.8
2850 Male, age 76, both hemispheres 35.3
Periaquaductal grey, lateral
nTPM: 40.0
2053 Male, age 18, unknown 45.2
2140 Male, age 76, both hemispheres 39.5
2272 Male, age 74, both hemispheres 35.2
Pretectal area
nTPM: 35.6
2825 Male, age 18, unknown 42.0
2667 Female, age 75, unknown 40.3
2224 Female, age 72, unknown 39.7
2407 Male, age 75, both hemispheres 39.2
2273 Male, age 74, both hemispheres 37.8
1944 Female, age 72, unknown 33.8
2316 Male, age 76, right hemisphere 33.8
1817 Female, age 42, unknown 33.1
1815 Male, age 53, unknown 31.9
1816 Male, age 51, unknown 31.3
2007 Male, age 72, unknown 28.5
Red nucleus
nTPM: 33.8
2227 Male, age 72, unknown 37.0
1821 Female, age 72, unknown 36.8
2503 Female, age 72, unknown 36.3
2588 Male, age 74, left hemisphere 36.1
1954 Female, age 42, unknown 34.7
2725 Female, age 75, unknown 34.4
2584 Male, age 75, left hemisphere 33.8
2769 Male, age 72, unknown 33.3
1865 Male, age 51, unknown 32.5
1904 Male, age 53, unknown 31.0
2823 Male, age 76, right hemisphere 30.5
2785 Male, age 18, unknown 29.1
Substantia nigra
nTPM: 61.9
2699 Male, age 18, unknown 118.5
1916 Female, age 42, unknown 84.7
1941 Male, age 53, unknown 75.3
2241 Male, age 72, unknown 67.3
1851 Male, age 51, unknown 61.0
2409 Female, age 72, unknown 49.7
2665 Male, age 74, both hemispheres 45.8
2583 Male, age 75, right hemisphere 41.7
1889 Female, age 72, unknown 38.1
2590 Female, age 75, unknown 37.1
Superior colliculus
nTPM: 38.5
1796 Male, age 53, unknown 47.1
1895 Male, age 76, right hemisphere 46.0
1839 Male, age 51, unknown 44.3
2664 Male, age 75, both hemispheres 39.9
2668 Female, age 75, unknown 39.3
2587 Male, age 74, left hemisphere 36.3
2087 Female, age 72, unknown 35.4
1913 Female, age 42, unknown 32.3
1995 Male, age 72, unknown 32.2
2261 Male, age 18, unknown 31.9
Ventral tegmental area
nTPM: 54.4
1915 Female, age 42, unknown 72.0
2218 Male, age 76, both hemispheres 65.4
1942 Male, age 51, unknown 53.8
2410 Female, age 72, unknown 52.6
2223 Female, age 72, unknown 47.0
2021 Male, age 53, unknown 35.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.5
Samples: 139

Max nTPM: 130.3
Min nTPM: 5.6
Std nTPM: 20.1
Median nTPM: 37.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 130.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 95.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 92.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 86.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 85.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 85.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 82.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 81.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 81.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 77.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 75.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.8
FF:10158-103A5 76 years, female 20.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.2
Pig sample Sample description nTPM
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 26.2
Min nTPM: 13.5
Sample A Female 25.7
Sample B Female 26.2
Sample C Male 13.5
Sample D Male 17.6
Periaqueductal gray
nTPM: 24.7
Samples: 3

Max nTPM: 26.1
Min nTPM: 22.8
Sample B Female 26.1
Sample C Male 25.2
Sample D Male 22.8
Substantia nigra
nTPM: 33.3
Samples: 4

Max nTPM: 47.1
Min nTPM: 15.4
Sample A Female 44.0
Sample B Female 26.6
Sample C Male 47.1
Sample D Male 15.4
Superior colliculi
nTPM: 16.6
Samples: 4

Max nTPM: 22.6
Min nTPM: 8.2
Sample A Female 21.8
Sample B Female 8.2
Sample C Male 13.8
Sample D Male 22.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.3
Samples: 4

Max nTPM: 48.3
Min nTPM: 43.4
Sample A Male 44.0
Sample B Male 45.4
Sample C Female 48.3
Sample D Female 43.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
73616037 Antisense, RP_050818_02_H04, Mouse strain C57BL/6J (56 days, male) 1.5
71281865 Antisense, RP_050818_02_H04, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.