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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:804.8 nTPM
GTEx:804.8 nTPM
FANTOM5:261.6 Scaled Tags Per Million
Pig:164.2 nTPM
Mouse:2506.1 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA005561
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Medium

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA075056
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 804.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 804.8
Samples: 105

Max nTPM: 1710.8
Min nTPM: 105.5
Std nTPM: 355.8
Median nTPM:
352_1 62 years, male 1710.8
319_1 81 years, male 1588.3
425_1 59 years, female 1452.9
163_1 78 years, male 1433.4
377_1 82 years, female 1405.9
218_1 71 years, female 1393.2
394_1 75 years, female 1387.8
321_1 62 years, female 1371.3
355_1 70 years, female 1297.0
246_1 77 years, male 1256.4
243_1 75 years, male 1230.1
172_1 72 years, female 1228.9
389_1 86 years, female 1220.2
406_1 79 years, male 1215.1
386_1 76 years, male 1179.8
384_1 83 years, male 1178.6
350_1 84 years, female 1159.5
6_1 73 years, female 1119.6
503_1 68 years, male 1113.3
115_1 83 years, male 1105.2
375_1 74 years, female 1103.7
354_1 81 years, female 1103.2
189_1 76 years, male 1101.3
318_1 68 years, male 1093.1
347_1 72 years, male 1091.5
177_1 74 years, male 1089.6
356_1 87 years, female 1081.0
376_1 75 years, female 1077.4
251_1 78 years, male 1057.6
349_1 83 years, male 1043.3
447_1 81 years, male 1032.9
404_1 82 years, female 1029.2
405_1 91 years, male 1011.7
517_1 88 years, male 1007.7
526_1 61 years, male 1004.1
480_1 63 years, male 990.7
468_1 89 years, male 987.6
229_1 69 years, female 985.7
291_1 76 years, male 985.1
237_1 82 years, male 977.2
292_1 71 years, male 971.9
320_1 89 years, female 945.8
316_1 62 years, male 945.2
153_1 70 years, female 934.1
379_1 60 years, male 885.0
335_1 73 years, female 873.5
322_1 76 years, male 862.7
351_1 91 years, male 855.3
286_1 68 years, female 832.5
265_1 87 years, male 831.9
254_1 77 years, female 827.4
293_1 68 years, female 820.6
126_1 63 years, male 795.5
9_1 66 years, female 790.1
217_1 76 years, male 778.0
99_1 64 years, male 768.3
35_1 74 years, female 767.5
353_1 82 years, female 755.9
348_1 84 years, male 748.7
18_1 88 years, male 748.6
173_1 67 years, male 735.3
4_1 88 years, female 721.6
295_1 61 years, female 715.3
518_1 75 years, female 706.8
264_1 73 years, female 696.9
2_1 77 years, female 693.8
396_1 62 years, male 687.8
317_1 60 years, male 640.1
452_1 88 years, female 640.0
506_1 65 years, male 639.4
145_1 84 years, male 638.8
266_1 85 years, male 619.6
17_1 71 years, male 606.2
42_1 85 years, male 587.2
137_1 83 years, male 564.0
324_1 76 years, male 539.4
109_1 81 years, female 532.2
311_1 78 years, male 514.3
120_1 70 years, female 510.4
142_1 61 years, female 491.3
117_1 61 years, male 489.2
307_1 66 years, female 462.7
139_1 64 years, female 457.5
81_1 67 years, male 455.9
162_1 79 years, female 454.0
499_1 55 years, female 423.8
314_1 67 years, male 420.4
315_1 62 years, female 400.1
288_1 66 years, female 395.1
41_1 94 years, female 378.7
32_1 67 years, male 360.3
313_1 79 years, female 359.8
415_1 77 years, female 352.5
414_1 84 years, female 347.9
43_1 64 years, female 343.4
466_1 57 years, female 329.2
119_1 70 years, female 324.7
89_1 63 years, male 284.6
501_1 88 years, male 246.6
413_1 59 years, female 244.4
149_1 88 years, male 220.1
495_1 57 years, female 209.0
308_1 70 years, female 190.0
490_1 67 years, female 128.3
491_1 89 years, female 105.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 261.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 261.6
FF:10030-101E3 24-65 years, mixed 261.6

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 164.2
Pig sample Sample description nTPM
Retina
nTPM: 164.2
Samples: 4

Max nTPM: 183.8
Min nTPM: 155.0
Sample A Female 159.0
Sample B Female 183.8
Sample C Male 155.0
Sample D Male 158.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2506.1
Mouse sample Sample description nTPM
Retina
nTPM: 2506.1
Samples: 4

Max nTPM: 3413.6
Min nTPM: 2158.3
Sample A Male 2266.7
Sample B Male 2185.6
Sample C Female 3413.6
Sample D Female 2158.3

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by the Knut & Alice Wallenberg Foundation.