MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.1 nTPM
HPA:74.1 nTPM
GTEx:112.2 nTPM
FANTOM5:43.0 Scaled Tags Per Million
Mouse:3.2 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.3
1830 Male, age 51, unknown 65.5
1833 Male, age 53, unknown 63.8
2019 Male, age 18, unknown 60.6
1870 Female, age 42, unknown 57.6
2411 Female, age 72, unknown 57.4
2828 Female, age 72, unknown 54.0
2586 Male, age 75, left hemisphere 53.1
2666 Male, age 74, left hemisphere 52.9
2219 Male, age 76, both hemispheres 52.3
1827 Male, age 72, unknown 45.4
Dorsal raphe nucleus
nTPM: 43.7
2750 Male, age 76, both hemispheres 59.5
2016 Female, age 72, unknown 46.1
1828 Male, age 53, unknown 45.4
2047 Male, age 72, unknown 34.9
2298 Female, age 72, unknown 32.4
Inferior colliculus
nTPM: 41.4
2849 Male, age 72, unknown 46.5
1848 Female, age 42, unknown 42.4
1890 Male, age 53, unknown 41.5
2097 Female, age 72, unknown 35.1
Median raphe nucleus
nTPM: 38.6
2220 Male, age 76, midline 38.6
Pedunculopontine tegmental nucleus
nTPM: 47.3
2334 Male, age 80, both hemispheres 52.3
2338 Male, age 61, both hemispheres 46.9
1921 Female, age 85, both hemispheres 42.7
Periaquaductal grey, anterior
nTPM: 41.2
2502 Female, age 75, unknown 44.1
1947 Male, age 18, unknown 41.1
1795 Male, age 51, unknown 38.4
Periaquaductal grey, dorsal
nTPM: 38.3
2464 Female, age 72, unknown 46.4
1831 Male, age 72, unknown 37.8
2850 Male, age 76, both hemispheres 37.1
1840 Male, age 53, unknown 32.0
Periaquaductal grey, lateral
nTPM: 39.2
2272 Male, age 74, both hemispheres 40.6
2053 Male, age 18, unknown 39.4
2140 Male, age 76, both hemispheres 37.5
Pretectal area
nTPM: 40.7
1815 Male, age 53, unknown 49.1
2316 Male, age 76, right hemisphere 47.9
2667 Female, age 75, unknown 45.3
2825 Male, age 18, unknown 43.9
2407 Male, age 75, both hemispheres 42.2
1817 Female, age 42, unknown 42.0
2007 Male, age 72, unknown 41.4
2224 Female, age 72, unknown 38.6
2273 Male, age 74, both hemispheres 34.5
1944 Female, age 72, unknown 32.3
1816 Male, age 51, unknown 30.6
Red nucleus
nTPM: 74.1
1865 Male, age 51, unknown 85.1
1904 Male, age 53, unknown 84.2
2769 Male, age 72, unknown 82.7
2823 Male, age 76, right hemisphere 82.3
2227 Male, age 72, unknown 81.4
2503 Female, age 72, unknown 79.6
1821 Female, age 72, unknown 74.5
2588 Male, age 74, left hemisphere 72.0
1954 Female, age 42, unknown 68.3
2785 Male, age 18, unknown 66.4
2584 Male, age 75, left hemisphere 57.6
2725 Female, age 75, unknown 55.0
Substantia nigra
nTPM: 47.8
2699 Male, age 18, unknown 58.0
2583 Male, age 75, right hemisphere 55.8
2409 Female, age 72, unknown 54.8
1851 Male, age 51, unknown 52.0
2590 Female, age 75, unknown 48.9
1889 Female, age 72, unknown 45.2
2665 Male, age 74, both hemispheres 45.2
1941 Male, age 53, unknown 40.9
1916 Female, age 42, unknown 39.7
2241 Male, age 72, unknown 37.7
Superior colliculus
nTPM: 46.1
1995 Male, age 72, unknown 60.9
1913 Female, age 42, unknown 56.4
1895 Male, age 76, right hemisphere 49.6
1839 Male, age 51, unknown 49.2
2587 Male, age 74, left hemisphere 45.8
2668 Female, age 75, unknown 45.5
1796 Male, age 53, unknown 41.8
2664 Male, age 75, both hemispheres 41.7
2087 Female, age 72, unknown 35.2
2261 Male, age 18, unknown 34.4
Ventral tegmental area
nTPM: 47.2
2223 Female, age 72, unknown 62.1
2410 Female, age 72, unknown 50.5
2218 Male, age 76, both hemispheres 44.2
1942 Male, age 51, unknown 43.8
2021 Male, age 53, unknown 41.4
1915 Female, age 42, unknown 41.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 112.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.2
Samples: 139

Max nTPM: 316.2
Min nTPM: 33.2
Std nTPM: 46.4
Median nTPM: 105.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 316.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 269.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 262.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 224.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 210.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 203.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 197.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 193.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 192.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 191.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 182.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.0
FF:10158-103A5 76 years, female 43.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.8
Sample A Male 3.9
Sample B Male 2.8
Sample C Female 2.9
Sample D Female 3.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
74750022 Antisense, RP_060220_05_E12, Mouse strain C57BL/6J (56 days, male) 1.1
70528545 Antisense, RP_050623_02_G12, Mouse strain C57BL/6J (56 days, male) 1.0

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