MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:102.3 nTPM
HPA:102.3 nTPM
GTEx:111.7 nTPM
FANTOM5:302.1 Scaled Tags Per Million
Pig:41.5 nTPM
Mouse:54.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.4
1870 Female, age 42, unknown 105.4
1830 Male, age 51, unknown 102.5
2411 Female, age 72, unknown 99.4
1833 Male, age 53, unknown 97.0
2019 Male, age 18, unknown 96.2
2828 Female, age 72, unknown 86.7
2666 Male, age 74, left hemisphere 82.5
2586 Male, age 75, left hemisphere 79.0
1827 Male, age 72, unknown 77.5
2219 Male, age 76, both hemispheres 77.3
Dorsal raphe nucleus
nTPM: 84.1
2750 Male, age 76, both hemispheres 99.3
2016 Female, age 72, unknown 86.4
1828 Male, age 53, unknown 82.2
2047 Male, age 72, unknown 77.7
2298 Female, age 72, unknown 74.9
Inferior colliculus
nTPM: 80.8
1848 Female, age 42, unknown 82.7
1890 Male, age 53, unknown 81.6
2097 Female, age 72, unknown 80.0
2849 Male, age 72, unknown 78.9
Median raphe nucleus
nTPM: 83.2
2220 Male, age 76, midline 83.2
Pedunculopontine tegmental nucleus
nTPM: 88.0
2338 Male, age 61, both hemispheres 93.0
2334 Male, age 80, both hemispheres 90.8
1921 Female, age 85, both hemispheres 80.2
Periaquaductal grey, anterior
nTPM: 78.3
2502 Female, age 75, unknown 84.3
1947 Male, age 18, unknown 78.2
1795 Male, age 51, unknown 72.4
Periaquaductal grey, dorsal
nTPM: 78.0
2464 Female, age 72, unknown 84.2
2850 Male, age 76, both hemispheres 78.6
1831 Male, age 72, unknown 78.2
1840 Male, age 53, unknown 70.9
Periaquaductal grey, lateral
nTPM: 78.7
2053 Male, age 18, unknown 79.6
2272 Male, age 74, both hemispheres 78.5
2140 Male, age 76, both hemispheres 77.8
Pretectal area
nTPM: 79.1
2316 Male, age 76, right hemisphere 87.0
1815 Male, age 53, unknown 86.7
1817 Female, age 42, unknown 82.3
2667 Female, age 75, unknown 79.9
2825 Male, age 18, unknown 79.3
2273 Male, age 74, both hemispheres 78.7
2407 Male, age 75, both hemispheres 78.2
2224 Female, age 72, unknown 77.4
2007 Male, age 72, unknown 77.0
1944 Female, age 72, unknown 73.5
1816 Male, age 51, unknown 69.8
Red nucleus
nTPM: 102.3
1865 Male, age 51, unknown 115.9
1904 Male, age 53, unknown 114.0
1821 Female, age 72, unknown 110.6
1954 Female, age 42, unknown 109.2
2227 Male, age 72, unknown 107.6
2769 Male, age 72, unknown 107.1
2785 Male, age 18, unknown 100.8
2503 Female, age 72, unknown 99.9
2823 Male, age 76, right hemisphere 98.7
2588 Male, age 74, left hemisphere 93.6
2725 Female, age 75, unknown 86.7
2584 Male, age 75, left hemisphere 83.1
Substantia nigra
nTPM: 84.1
2409 Female, age 72, unknown 90.0
1851 Male, age 51, unknown 88.4
2699 Male, age 18, unknown 88.2
2590 Female, age 75, unknown 86.4
2241 Male, age 72, unknown 84.0
1889 Female, age 72, unknown 83.9
2583 Male, age 75, right hemisphere 82.8
2665 Male, age 74, both hemispheres 81.0
1941 Male, age 53, unknown 78.8
1916 Female, age 42, unknown 77.3
Superior colliculus
nTPM: 85.3
1913 Female, age 42, unknown 104.6
1995 Male, age 72, unknown 100.4
2587 Male, age 74, left hemisphere 88.9
1839 Male, age 51, unknown 85.6
2668 Female, age 75, unknown 85.1
1895 Male, age 76, right hemisphere 84.3
1796 Male, age 53, unknown 78.5
2664 Male, age 75, both hemispheres 76.2
2087 Female, age 72, unknown 75.5
2261 Male, age 18, unknown 74.1
Ventral tegmental area
nTPM: 90.3
2223 Female, age 72, unknown 107.6
2410 Female, age 72, unknown 97.7
2021 Male, age 53, unknown 87.5
1942 Male, age 51, unknown 83.6
2218 Male, age 76, both hemispheres 83.1
1915 Female, age 42, unknown 82.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 111.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.7
Samples: 139

Max nTPM: 252.3
Min nTPM: 37.6
Std nTPM: 36.2
Median nTPM: 108.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 252.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 216.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 203.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 188.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 180.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 177.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 172.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 172.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 170.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 167.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 165.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 302.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 302.1
FF:10158-103A5 76 years, female 302.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.5
Pig sample Sample description nTPM
Midbrain
nTPM: 41.5
Samples: 4

Max nTPM: 84.5
Min nTPM: 21.7
Sample A Female 84.5
Sample B Female 35.8
Sample C Male 23.8
Sample D Male 21.7
Periaqueductal gray
nTPM: 28.9
Samples: 3

Max nTPM: 33.7
Min nTPM: 26.0
Sample B Female 33.7
Sample C Male 26.0
Sample D Male 26.9
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 47.1
Min nTPM: 31.2
Sample A Female 44.7
Sample B Female 36.4
Sample C Male 31.2
Sample D Male 47.1
Superior colliculi
nTPM: 38.0
Samples: 4

Max nTPM: 46.6
Min nTPM: 31.3
Sample A Female 46.6
Sample B Female 39.2
Sample C Male 31.3
Sample D Male 34.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.4
Samples: 4

Max nTPM: 57.5
Min nTPM: 51.4
Sample A Male 55.5
Sample B Male 51.4
Sample C Female 53.0
Sample D Female 57.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71378603 Antisense, RP_050517_02_A01, Mouse strain C57BL/6J (56 days, male) 0.2
70919812 Antisense, RP_050713_02_B02, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.