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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:97.2 nTPM
HPA:97.2 nTPM
GTEx:189.0 nTPM
FANTOM5:291.1 Scaled Tags Per Million
Pig:57.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 97.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 90.1
1981 Female, age 72, midline 101.2
2048 Male, age 55, midline 97.6
2816 Male, age 47, midline 87.6
2194 Female, age 79, both hemispheres 84.1
2565 Male, age 75, midline 79.8
Cervical spinal cord, dorsal horn
nTPM: 96.0
2296 Male, age 66, both hemispheres 117.7
2173 Female, age 72, unknown 116.7
2069 Male, age 47, both hemispheres 97.8
1877 Male, age 55, unknown 89.5
2297 Male, age 75, both hemispheres 77.2
2721 Male, age 90, both hemispheres 76.9
Cervical spinal cord, ventral horn
nTPM: 97.2
2098 Female, age 72, unknown 111.1
2480 Male, age 75, both hemispheres 99.4
2295 Male, age 66, both hemispheres 99.2
2809 Male, age 90, both hemispheres 96.1
2068 Male, age 55, unknown 93.5
2820 Female, age 79, both hemispheres 83.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 189.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 189.0
Samples: 159

Max nTPM: 300.6
Min nTPM: 64.7
Std nTPM: 52.5
Median nTPM: 191.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 300.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 294.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 289.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 285.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 281.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 280.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 278.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 277.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 275.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 274.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 271.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 267.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 266.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 265.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 264.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 261.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 257.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 256.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 253.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 253.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 252.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 248.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 248.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 246.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 244.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 243.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 242.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 241.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 239.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 238.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 237.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 235.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 235.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 234.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 232.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 232.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 231.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 231.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 230.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 228.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 227.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 226.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 223.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 221.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 220.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 220.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 216.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 216.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 215.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 214.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 213.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 213.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 212.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 212.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 211.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 210.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 210.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 209.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 208.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 208.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 207.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 206.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 206.2
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 206.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 203.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 202.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 202.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 199.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 197.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 195.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 195.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 194.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 193.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 193.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 191.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 191.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 191.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 191.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 191.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 191.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 190.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 189.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 188.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 186.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 186.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 186.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 185.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 185.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 184.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 183.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 181.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 181.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 180.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 180.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 180.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 179.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 179.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 178.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 176.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 176.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 174.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 174.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 172.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 172.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 169.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 168.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 164.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 164.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 163.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 161.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 161.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 160.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 159.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 159.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 158.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 157.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 155.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 155.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 154.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 154.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 153.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 148.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 147.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 146.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 146.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 146.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 144.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 143.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 143.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 137.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 137.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 136.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 136.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 133.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 131.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 129.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 129.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 123.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 122.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 122.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 120.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 114.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 114.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 109.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 108.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 108.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 107.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 105.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 104.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 104.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 101.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 100.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 96.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 96.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 91.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 74.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 69.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 64.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 291.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 291.1
FF:10159-103A6 76 years, female 323.0
FF:10181-103D1 60 years, female 259.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 57.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 54.8
Samples: 4

Max nTPM: 70.4
Min nTPM: 45.7
Sample A Female 50.1
Sample B Female 53.1
Sample C Male 70.4
Sample D Male 45.7
Ventral spinal cord
nTPM: 57.8
Samples: 4

Max nTPM: 64.2
Min nTPM: 54.2
Sample A Female 58.3
Sample B Female 54.2
Sample C Male 54.4
Sample D Male 64.2

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